Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 4.6e-212 741.1 413 100.0
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 3.4e-130 469.2 453 63.8
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 1.2e-122 444.1 429 64.1
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 2.1e-116 423.3 456 59.4
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 1.2e-90 337.8 422 52.1
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 1.6e-87 327.4 417 52.3
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 3.9e-86 322.8 429 49.2
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 2.1e-84 317.0 456 48.0
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.1e-83 314.7 423 53.0
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 1.5e-82 310.8 420 51.9
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 3.4e-82 309.7 423 50.1
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 3.4e-82 309.7 459 46.8
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 4.9e-81 305.8 423 52.7
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 6.4e-81 305.4 427 51.1
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 8.4e-81 305.1 416 48.3
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 8.4e-81 305.1 435 46.2
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 1.4e-80 304.3 448 47.5
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 3.9e-78 296.2 329 55.0
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.5e-77 294.3 425 49.2
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.8e-76 290.0 412 47.6
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 2.8e-76 290.0 412 47.6
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.4e-75 287.7 414 47.3
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 1.8e-75 287.3 386 53.9
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 4.5e-74 282.7 407 47.4
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 3.2e-72 276.6 310 54.2
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 5.5e-72 275.8 435 47.6
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 2.3e-70 270.4 426 50.0
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 2.1e-68 263.8 421 45.6
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.1e-64 251.5 448 47.5
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 2.5e-64 250.4 418 43.5
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 7.1e-64 248.8 387 53.5
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 3.5e-63 246.5 418 45.0
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 7.9e-63 245.4 400 45.2
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 8.7e-62 241.9 422 43.1
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 5.7e-61 239.2 422 43.6
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 7.4e-61 238.8 415 42.7
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 2.8e-60 236.9 306 49.3
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 3.7e-60 236.5 382 46.1
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 4.8e-60 236.1 305 49.5
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 6.3e-60 235.7 309 48.9
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 1.1e-59 235.0 427 42.4
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-59 235.0 422 41.7
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.1e-59 235.0 411 41.6
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.8e-59 234.2 431 49.0
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 2.4e-59 233.8 426 41.8
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 5.3e-59 232.6 309 48.5
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 2.0e-58 230.7 438 38.8
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 4.5e-58 229.6 422 42.7
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 5.9e-58 229.2 398 44.0
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 7.6e-58 228.8 439 46.9
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 1.0e-57 228.4 386 44.3
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 8.5e-57 225.3 416 42.1
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.4e-56 224.6 305 47.5
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 4.2e-56 223.0 411 41.4
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 5.5e-56 222.6 396 42.7
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 4.6e-55 219.5 423 42.6
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.8e-54 217.6 256 53.9
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 3.9e-54 216.5 435 40.7
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-53 214.9 420 41.0
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 1.5e-53 214.5 422 42.4
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 7.4e-53 212.2 415 41.4
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 3.7e-52 209.9 370 41.9
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.4e-51 208.0 433 39.0
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 1.8e-51 207.6 484 35.7
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 4.1e-51 206.5 466 37.3
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-50 204.9 446 39.7
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 1.5e-50 204.5 412 38.8
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 2.0e-50 204.1 264 49.6
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 5.9e-50 202.6 430 41.4
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 7.7e-50 202.2 306 46.7
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 1.3e-49 201.4 426 37.8
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 5.0e-49 199.5 431 39.0
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 7.2e-48 195.7 429 39.9
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 2.7e-47 193.7 305 44.9
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 3.6e-47 193.4 374 40.4
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 3.0e-46 190.3 431 41.8
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 2.0e-45 187.6 380 40.5
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 7.4e-45 185.7 429 39.2
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 1.2e-42 178.3 429 37.5
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 1.3e-41 174.9 231 48.1
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 1.7e-41 174.5 409 36.2
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 2.9e-41 173.7 253 46.2
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 3.8e-41 173.3 425 38.6
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 6.5e-41 172.6 522 38.3
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 9.4e-40 168.7 253 46.6
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 5.7e-37 159.5 185 51.9
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 9.7e-37 158.7 290 41.4
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 1.2e-34 151.8 299 41.8
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 3.2e-32 143.7 311 35.4
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 1.2e-31 141.7 348 36.5
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.0e-26 124.4 121 57.9
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 4.2e-24 116.7 277 35.4
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 5.7e-21 106.3 129 53.5
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 2.0e-18 97.8 229 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 8.3e-12 75.9 361 29.4
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 1.4e-11 75.1 132 40.9
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 4.1e-11 73.6 268 27.2
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 7.0e-11 72.8 73 52.1
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 7.0e-11 72.8 258 27.9
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-09 68.2 51 70.6
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 2.9e-09 67.4 242 26.9
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 1.1e-08 65.5 261 25.7
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.9e-08 64.7 268 27.6
Oeu018558.1 Olea europaea HOM05D007360 ORTHO05D008235 2.5e-08 64.3 110 42.7
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 3.3e-08 63.9 296 26.4
Atru.chr7.2544 Acer truncatum HOM05D005497 ORTHO05D006733 4.3e-08 63.5 255 26.7
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 4.3e-08 63.5 271 24.7
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 5.6e-08 63.2 275 25.5
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 5.6e-08 63.2 259 27.4
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 9.5e-08 62.4 278 28.4
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 1.2e-07 62.0 250 24.8
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.6e-07 61.6 239 25.5
SMO116G0351 Selaginella moellendorffii HOM05D005497 ORTHO05D006733 1.6e-07 61.6 147 35.4
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 3.6e-07 60.5 263 24.7
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.1e-07 59.7 49 63.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 6.1e-07 59.7 49 63.3
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.1e-07 59.7 49 63.3
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.1e-07 59.7 49 63.3
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 8.0e-07 59.3 276 26.1
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 1.0e-06 58.9 259 25.9
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 1.0e-06 58.9 300 25.3
Oeu063812.1 Olea europaea HOM05D007360 ORTHO05D008235 1.8e-06 58.2 110 39.1
VMungo1309G2451 Vigna mungo HOM05D005497 ORTHO05D006733 1.8e-06 58.2 268 26.1
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 3.0e-06 57.4 244 26.2
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 3.0e-06 57.4 241 26.6
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 3.0e-06 57.4 263 23.6
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 4.0e-06 57.0 255 25.5
Aqoxy2G02176 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 4.0e-06 57.0 240 22.9
Medtr3g106030 Medicago truncatula HOM05D005497 ORTHO05D006733 4.0e-06 57.0 277 26.4
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 5.2e-06 56.6 244 25.0
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.8e-06 56.2 245 26.5
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 6.8e-06 56.2 272 26.1


User provided reference genes

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