Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 9.9e-164 580.1 304 100.0
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.9e-160 568.2 304 98.4
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 9.0e-149 530.4 303 90.1
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 9.0e-149 530.4 303 90.1
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.3e-144 515.8 304 90.1
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.7e-144 514.2 303 89.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.4e-141 506.5 304 86.2
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.2e-139 499.2 304 85.2
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 2.5e-138 495.7 304 84.2
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.3e-134 483.4 304 82.9
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 1.1e-133 480.3 304 81.2
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 4.1e-133 478.4 302 82.8
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 7.0e-133 477.6 300 82.7
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.2e-132 476.9 304 81.9
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.0e-132 476.1 297 82.2
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.0e-132 476.1 304 81.9
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.5e-132 475.3 304 80.9
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.5e-132 474.9 304 81.2
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 5.9e-132 474.6 304 79.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-131 473.4 302 81.8
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.3e-131 473.4 304 81.2
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.9e-131 472.2 304 79.9
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 6.5e-131 471.1 299 82.6
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 4.2e-130 468.4 304 80.9
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 9.4e-130 467.2 304 79.6
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.1e-129 466.1 304 79.6
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 4.7e-129 464.9 297 81.8
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 6.1e-129 464.5 304 79.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 8.0e-129 464.2 304 79.3
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.0e-128 463.8 304 79.3
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.4e-128 463.4 305 79.3
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.3e-128 462.6 304 79.3
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.0e-128 462.2 304 78.9
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 8.8e-128 460.7 304 78.9
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 4.4e-127 458.4 298 81.2
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 7.4e-127 457.6 304 79.6
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 7.4e-127 457.6 304 78.3
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 9.7e-127 457.2 305 78.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 9.7e-127 457.2 304 78.3
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.8e-126 455.7 305 78.4
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 3.7e-126 455.3 296 81.1
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 6.3e-126 454.5 297 79.5
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.1e-125 452.2 304 77.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.1e-125 452.2 304 77.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.2e-124 450.3 305 77.4
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.0e-124 449.5 304 76.6
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.6e-124 449.1 304 77.6
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 77.3
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 77.3
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 2.2e-123 446.0 305 76.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.9e-123 445.7 305 77.4
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 3.8e-123 445.3 300 78.7
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.8e-123 445.3 298 79.2
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 5.0e-123 444.9 315 74.6
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 5.0e-123 444.9 305 76.7
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 6.5e-123 444.5 297 78.8
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 2.5e-122 442.6 308 76.3
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.5e-122 442.6 297 76.8
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 4.2e-122 441.8 310 75.8
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.5e-122 441.4 309 75.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 77.0
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.6e-121 439.9 304 76.0
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.1e-121 439.5 304 74.0
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.1e-121 439.5 304 73.7
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.1e-121 439.5 304 75.3
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.7e-121 439.1 304 76.0
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.7e-121 439.1 304 75.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.7e-121 439.1 304 75.3
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.0e-120 437.2 304 73.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.0e-120 437.2 304 73.4
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.3e-120 436.0 304 73.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 2.3e-120 436.0 304 74.0
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.3e-120 436.0 304 73.0
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 6.8e-120 434.5 304 75.0
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 8.8e-120 434.1 308 74.4
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.0e-119 433.0 304 73.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.5e-119 431.0 304 72.7
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 3.7e-118 428.7 306 74.8
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 73.7
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.7e-116 422.5 305 73.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 1.7e-115 419.9 305 73.8
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.2e-115 419.5 296 73.3
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 3.8e-115 418.7 304 73.7
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.5e-114 416.0 281 79.4
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 2.1e-113 412.9 295 72.9
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.7e-113 412.5 281 77.2
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.8e-112 409.8 304 71.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.0e-112 409.1 297 72.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.6e-111 406.0 298 73.2
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 4.4e-111 405.2 304 71.4
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 9.8e-111 404.1 291 73.2
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 9.8e-111 404.1 290 72.1
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 2.8e-110 402.5 281 75.4
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 4.8e-110 401.7 298 71.5
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.3e-110 401.0 281 77.2
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 2.0e-108 396.4 304 66.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 5.5e-106 388.3 298 68.1
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 7.2e-106 387.9 298 67.1
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.0e-104 384.0 300 67.3
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.5e-103 380.2 296 68.9
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.8e-102 375.9 302 64.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 9.2e-101 370.9 298 64.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 2.1e-97 359.8 273 71.4
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 3.6e-97 359.0 290 64.5
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.0e-93 344.7 281 64.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 2.7e-92 342.8 278 65.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.5e-90 336.3 295 64.4
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 2.3e-88 329.7 234 76.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 8.6e-83 311.2 195 82.6
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.4e-79 298.9 200 79.5
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 2.2e-78 296.6 304 55.9
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 4.2e-69 265.8 177 76.3
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.5e-66 256.5 293 50.2
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 4.0e-64 249.2 159 81.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.0e-63 246.9 291 49.1
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.0e-60 235.3 292 50.3
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 7.9e-60 235.0 195 65.1
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 5.1e-59 232.3 194 62.9
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 8.7e-59 231.5 338 44.4
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.3e-58 229.2 139 83.5
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 4.6e-52 209.1 237 57.4
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 7.4e-50 201.8 142 73.2
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 4.3e-42 176.0 211 49.3
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 2.4e-40 170.2 186 54.8
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.1e-40 169.5 115 79.1
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 1.2e-36 157.9 111 73.9
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.9e-35 152.9 99 74.7
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.1e-34 151.4 182 46.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.6e-33 147.5 289 37.7
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.3e-32 142.5 97 79.4
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.4e-21 107.8 86 64.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 3.3e-18 96.7 293 30.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 5.7e-18 95.9 85 68.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 1.3e-17 94.7 81 59.3
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 4.8e-17 92.8 60 75.0
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 8.2e-17 92.0 305 28.9
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.0e-15 87.4 186 36.6
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 2.6e-15 87.0 48 83.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 8.5e-14 82.0 150 38.7
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 6.3e-09 65.9 57 61.4


User provided reference genes

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