Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.2e-214 749.6 381 100.0
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.3e-101 373.2 453 51.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 5.7e-100 368.6 453 50.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.1e-98 361.3 449 50.8
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 9.1e-90 334.7 466 48.3
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.2e-87 325.9 460 45.2
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 2.7e-86 323.2 454 44.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.7e-86 323.2 457 46.6
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.8e-85 320.5 452 44.7
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.5e-84 317.4 447 45.4
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 8.3e-83 311.6 443 44.0
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 5.4e-82 308.9 453 45.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.7e-81 306.6 448 43.5
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.0e-80 302.4 442 43.2
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.5e-79 300.8 447 43.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.9e-79 300.4 456 43.0
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.9e-79 300.4 445 42.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.5e-79 300.1 447 43.8
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.3e-79 299.7 446 41.3
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 4.2e-79 299.3 452 44.0
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 7.2e-79 298.5 453 42.8
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 9.5e-79 298.1 449 43.7
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 3.6e-78 296.2 445 43.8
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 6.1e-78 295.4 454 43.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 6.1e-78 295.4 454 43.8
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 8.0e-78 295.0 446 45.1
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.8e-77 293.9 439 41.7
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.3e-77 293.5 452 43.6
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 5.2e-77 292.4 463 42.3
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.2e-76 291.2 437 41.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.5e-76 290.8 449 43.7
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.5e-76 290.8 440 43.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 5.7e-76 288.9 429 43.6
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 7.5e-76 288.5 429 44.5
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 9.8e-76 288.1 442 42.3
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.2e-75 287.0 429 44.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.7e-75 286.2 437 43.7
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.9e-75 285.8 426 44.6
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 6.3e-75 285.4 439 42.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 8.3e-75 285.0 429 42.4
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.0e-74 282.0 449 41.0
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.0e-74 282.0 449 40.5
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.2e-73 281.2 445 41.3
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.8e-73 278.5 429 43.1
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.0e-72 278.1 429 43.1
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.3e-72 277.7 448 41.1
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-72 277.3 429 43.1
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.3e-72 276.9 459 38.8
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 2.9e-72 276.6 434 43.1
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.9e-72 276.2 425 42.4
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.9e-72 276.2 429 42.0
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.0e-72 275.8 429 42.0
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-71 274.6 429 41.7
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.2e-70 271.2 439 41.0
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.6e-70 270.8 475 39.4
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.6e-70 270.8 469 38.6
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 2.1e-70 270.4 456 39.9
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.7e-70 269.2 433 43.9
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 4.7e-70 269.2 449 41.4
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 4.7e-70 269.2 447 39.8
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 8.0e-70 268.5 452 41.4
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.0e-69 268.1 459 39.9
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.8e-69 265.4 432 43.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.6e-68 263.5 454 38.5
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.4e-68 262.7 456 38.4
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.4e-68 262.7 440 38.6
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 7.5e-68 261.9 456 38.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 7.5e-68 261.9 434 39.4
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 7.5e-68 261.9 442 41.6
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 9.8e-68 261.5 445 39.3
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.9e-67 260.0 406 40.6
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.7e-67 259.6 428 39.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.7e-67 259.6 416 38.9
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.9e-67 259.2 436 39.4
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 8.3e-67 258.5 440 39.8
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-66 257.3 440 39.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 3.2e-66 256.5 429 38.2
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 9.2e-66 255.0 440 39.3
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.2e-66 255.0 433 39.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 6.0e-65 252.3 428 38.1
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.0e-64 251.5 415 38.3
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.3e-64 251.1 430 38.6
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.7e-64 250.8 410 39.0
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.3e-64 250.4 435 37.9
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.3e-64 250.4 450 38.7
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 5.0e-64 249.2 444 37.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.4e-61 241.1 439 36.7
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.4e-61 241.1 422 38.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.4e-61 241.1 422 38.2
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 6.8e-61 238.8 246 51.6
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 8.9e-61 238.4 445 36.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.5e-60 237.7 445 36.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.2e-59 233.8 249 50.2
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.2e-59 233.8 249 50.2
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.2e-59 233.8 426 37.8
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.7e-59 233.0 244 51.6
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.9e-58 230.7 373 43.4
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 3.2e-58 229.9 441 35.1
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-58 229.6 244 50.8
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-58 229.6 244 50.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 5.4e-58 229.2 386 39.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 7.1e-58 228.8 444 35.4
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.7e-57 226.9 453 36.2
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.0e-56 224.9 446 37.4
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.0e-56 223.4 241 49.8
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.9e-56 223.0 450 36.9
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 8.6e-56 221.9 413 36.6
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.1e-55 221.5 445 36.4
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.6e-55 219.2 493 34.3
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.1e-54 217.2 455 36.7
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.0e-53 213.0 421 34.0
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 9.9e-52 208.4 249 49.4
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.9e-50 204.1 437 33.9
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.7e-49 200.3 248 46.4
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-48 197.2 331 41.4
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 6.6e-48 195.7 368 35.3
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.1e-47 194.9 429 34.3
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-47 194.9 449 33.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 9.6e-47 191.8 421 32.5
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 8.1e-46 188.7 249 43.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 4.0e-45 186.4 405 32.3
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 1.5e-44 184.5 429 30.5
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 8.4e-43 178.7 410 32.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.2e-42 176.8 404 36.6
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 3.5e-41 173.3 387 31.5
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.4e-28 130.2 212 35.4
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 4.9e-27 126.3 396 27.5
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 5.4e-26 122.9 411 28.2
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.1e-24 116.3 130 46.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 7.4e-23 112.5 415 26.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.6e-22 111.3 107 57.0
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 4.8e-22 109.8 443 26.2
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.0e-21 106.7 395 28.4
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.5e-20 103.2 297 32.3
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.4e-18 98.2 232 31.0
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 5.5e-18 96.3 313 29.7
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-15 87.0 101 46.5
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 6.2e-14 82.8 123 48.0
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-13 80.9 106 52.8
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.4e-13 80.9 396 25.5
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.4e-12 77.0 184 27.2
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.5e-12 76.6 151 39.7
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 5.8e-12 76.3 402 24.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-11 75.5 105 50.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.8e-11 73.6 62 67.7
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.1e-10 72.0 92 45.7
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.1e-09 67.8 99 38.4
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-09 67.4 70 57.1
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.9e-09 65.9 69 58.0
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-08 64.7 61 60.7
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-08 63.9 82 48.8
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 3.0e-08 63.9 215 29.3
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 8.7e-08 62.4 230 26.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.1e-07 62.0 84 40.5
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 1.3e-06 58.5 108 42.6
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 8.2e-06 55.8 92 40.2


User provided reference genes

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