Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 8.0e-128 461.8 238 100.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 3.5e-83 313.5 231 70.1
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 1.3e-77 295.0 195 76.9
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 3.5e-75 287.0 195 75.9
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 1.3e-64 251.9 232 54.7
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 2.5e-60 237.7 238 52.9
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.5e-60 237.7 238 52.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 7.9e-59 232.6 218 59.2
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.4e-58 231.9 238 55.9
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 8.8e-58 229.2 238 50.4
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.1e-57 228.8 227 55.9
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.0e-57 228.0 218 54.6
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.3e-57 227.3 159 72.3
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.3e-57 226.9 218 53.7
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 7.4e-57 226.1 238 51.3
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 2.2e-56 224.6 204 55.4
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 4.8e-56 223.4 238 50.8
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.8e-55 221.5 223 53.8
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 9.1e-55 219.2 200 59.5
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 1.2e-54 218.8 208 56.7
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.0e-54 218.0 230 50.9
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-53 214.9 214 52.3
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 8.5e-53 212.6 189 60.3
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 5.5e-52 209.9 216 50.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 9.4e-52 209.1 207 56.0
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.2e-51 208.8 238 49.6
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.6e-51 208.4 213 51.6
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 2.1e-51 208.0 239 47.7
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 6.1e-51 206.5 226 50.4
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 6.1e-51 206.5 238 47.1
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.0e-50 205.7 199 56.8
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 8.8e-50 202.6 220 50.9
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.7e-48 198.4 238 47.5
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.7e-48 197.2 226 48.2
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.1e-47 195.7 196 54.6
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.3e-47 193.4 193 49.7
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 2.6e-46 191.0 193 54.4
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 4.5e-46 190.3 225 48.0
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.7e-45 188.3 263 42.2
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.7e-45 188.3 242 45.9
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.2e-45 188.0 225 47.6
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 6.5e-45 186.4 225 47.6
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 7.2e-44 183.0 235 43.8
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 9.4e-44 182.6 173 58.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 8.0e-43 179.5 246 44.7
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 1.4e-42 178.7 200 48.0
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.0e-42 177.6 171 55.6
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 3.0e-42 177.6 178 57.3
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.9e-42 177.2 190 48.9
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 6.7e-42 176.4 248 45.2
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.8e-42 176.0 220 45.5
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 8.8e-42 176.0 242 42.1
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 2.6e-41 174.5 237 43.5
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 5.7e-41 173.3 238 42.0
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 1.3e-40 172.2 235 46.4
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 2.2e-40 171.4 197 46.7
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 6.3e-40 169.9 177 51.4
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-39 167.9 208 48.6
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.1e-39 167.5 193 49.7
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 9.1e-39 166.0 202 47.0
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 2.0e-38 164.9 198 50.0
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 3.5e-38 164.1 206 42.7
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 7.7e-38 162.9 207 47.3
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.0e-37 162.5 198 47.5
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 2.9e-37 161.0 241 39.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 1.9e-36 158.3 194 46.4
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.9e-36 158.3 218 42.7
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.5e-36 157.9 238 38.7
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 7.2e-36 156.4 241 39.0
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 3.6e-35 154.1 200 40.0
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.7e-35 153.7 240 38.8
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 6.8e-34 149.8 231 39.8
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.5e-33 148.7 200 44.5
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 5.7e-33 146.7 216 40.7
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 7.5e-33 146.4 241 36.9
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.3e-32 145.6 238 40.3
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 1.3e-32 145.6 229 38.9
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.7e-32 145.2 229 38.9
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-32 144.4 189 46.0
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.8e-32 143.7 138 54.3
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 4.8e-32 143.7 237 33.8
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 4.1e-31 140.6 242 36.0
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.2e-30 139.0 215 37.7
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.0e-30 138.3 139 49.6
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 2.0e-30 138.3 183 45.4
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.7e-30 137.9 183 45.9
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 4.5e-30 137.1 180 45.6
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 5.9e-30 136.7 183 44.3
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 5.9e-30 136.7 204 35.3
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 7.7e-30 136.3 215 37.7
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 1.0e-29 136.0 243 37.4
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.7e-29 135.2 210 39.0
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 1.7e-29 135.2 130 52.3
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 2.9e-29 134.4 218 37.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 5.0e-29 133.7 242 36.4
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 5.0e-29 133.7 207 39.6
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 6.5e-29 133.3 129 51.9
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 8.5e-29 132.9 117 56.4
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 5.5e-28 130.2 240 34.2
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 5.5e-28 130.2 205 38.5
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.6e-27 128.6 244 35.7
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 3.6e-27 127.5 239 36.0
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 4.7e-27 127.1 239 33.1
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.4e-26 125.6 206 40.8
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.0e-26 124.4 204 36.8
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 5.2e-26 123.6 190 42.1
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 5.2e-26 123.6 202 37.6
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 5.2e-26 123.6 204 36.8
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 6.8e-26 123.2 203 40.9
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 1.5e-25 122.1 100 59.0
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.5e-25 122.1 138 42.8
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 4.4e-25 120.6 204 40.7
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 5.7e-25 120.2 211 37.4
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 5.7e-25 120.2 238 34.5
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 1.3e-24 119.0 204 39.7
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.3e-24 119.0 198 39.9
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 3.7e-24 117.5 204 39.7
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 3.7e-24 117.5 198 37.9
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 4.9e-24 117.1 181 41.4
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.9e-24 117.1 148 42.6
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 8.3e-24 116.3 204 39.2
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.8e-23 115.2 212 37.3
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.8e-23 115.2 115 48.7
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.4e-23 114.8 212 37.3
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 5.4e-23 113.6 227 33.9
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 7.0e-23 113.2 242 33.1
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 7.0e-23 113.2 204 36.3
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.7e-22 111.3 240 32.1
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.0e-21 109.4 241 34.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.7e-21 108.6 89 61.8
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.7e-21 108.6 232 33.2
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 5.5e-20 103.6 131 42.0
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.2e-19 102.4 204 35.3
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.0e-18 99.4 159 32.7
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 1.8e-18 98.6 225 33.3
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 8.9e-18 96.3 127 40.9
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 8.9e-18 96.3 162 40.7
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.2e-17 95.9 206 30.6
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 5.7e-17 93.6 179 28.5
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 9.8e-17 92.8 81 54.3
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.9e-16 90.5 79 59.5
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 4.9e-16 90.5 217 32.7
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 2.9e-13 81.3 69 52.2
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 2.9e-13 81.3 188 30.9
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 3.9e-13 80.9 99 45.5
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 7.3e-12 76.6 153 34.0
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 1.6e-11 75.5 65 55.4
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 8.9e-10 69.7 88 42.0
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 8.9e-10 69.7 56 64.3
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 1.7e-08 65.5 69 47.8
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 3.7e-08 64.3 191 24.6
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 6.4e-08 63.5 168 25.0
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 8.3e-08 63.2 173 30.6
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 2.4e-07 61.6 170 23.5
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 2.4e-07 61.6 170 23.5
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.2e-07 61.2 99 31.3
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 3.2e-07 61.2 220 25.0
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 4.1e-07 60.8 59 50.8
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 5.4e-07 60.5 191 23.0
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 9.2e-07 59.7 163 27.0
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 9.2e-07 59.7 187 23.5
ATR1136G126 Amborella trichopoda HOM05D004255 ORTHO05D004815 2.0e-06 58.5 111 33.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.0e-06 58.5 230 21.3
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 2.7e-06 58.2 187 23.0
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 2.7e-06 58.2 106 28.3
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 6.0e-06 57.0 146 30.1
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 6.0e-06 57.0 146 30.1
Lalb_Chr11g0073041 Lupinus albus HOM05D004255 ORTHO05D004815 6.0e-06 57.0 43 67.4
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 7.8e-06 56.6 109 24.8
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 7.8e-06 56.6 109 24.8
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.8e-06 56.6 75 37.3
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 7.8e-06 56.6 221 24.9


User provided reference genes

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