Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G154700 Carya illinoinensis HOM05D000003 ORTHO05D000167 4.5e-67 257.7 122 100.0
TAR199G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 8.7e-18 94.0 120 36.7
CiPaw.01G086600 Carya illinoinensis HOM05D000003 ORTHO05D000167 2.4e-12 75.9 109 39.4
Atru.chr9.887 Acer truncatum HOM05D000003 ORTHO05D000006 2.7e-11 72.4 122 35.2
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-11 71.6 121 37.2
QL04p033465 Quercus lobata HOM05D000003 ORTHO05D011877 1.8e-10 69.7 121 36.4
Atru.chr10.1041 Acer truncatum HOM05D000003 ORTHO05D000167 6.7e-10 67.8 128 33.6
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 8.7e-10 67.4 116 33.6
QL04p096329 Quercus lobata HOM05D000003 ORTHO05D000167 8.7e-10 67.4 122 36.1
Atru.chr11.235 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-09 66.6 117 29.9
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-09 66.2 116 33.6
QL11p039844 Quercus lobata HOM05D000003 ORTHO05D011877 1.9e-09 66.2 124 35.5
CSS0031955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 2.5e-09 65.9 129 34.1
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-09 65.1 113 32.7
QL02p051981 Quercus lobata HOM05D000003 ORTHO05D000167 4.3e-09 65.1 116 29.3
QL05p043982 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-09 64.7 124 33.9
QL05p017790 Quercus lobata HOM05D000003 ORTHO05D000167 7.4e-09 64.3 105 33.3
QL05p054879 Quercus lobata HOM05D000003 ORTHO05D000126 7.4e-09 64.3 112 34.8
Ah.11g043310 Amaranthus hybridus HOM05D000003 ORTHO05D000167 9.6e-09 63.9 120 32.5
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-08 63.5 127 29.1
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-08 63.2 112 30.4
QL04p096362 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-08 63.2 108 36.1
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-08 62.8 122 28.7
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-08 62.8 116 28.4
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 120 30.0
EL10Ac1g01308 Beta vulgaris HOM05D000003 ORTHO05D000167 2.8e-08 62.4 120 31.7
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 2.8e-08 62.4 103 31.1
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.0 118 29.7
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-08 62.0 128 30.5
QL09p011252 Quercus lobata HOM05D000003 ORTHO05D000167 4.8e-08 61.6 115 31.3
TAR331G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 4.8e-08 61.6 123 28.5
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 6.2e-08 61.2 119 27.7
CANSAT11G1274 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-08 61.2 104 34.6
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 6.2e-08 61.2 104 36.5
QL01p037957 Quercus lobata HOM05D000003 ORTHO05D029996 6.2e-08 61.2 101 35.6
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-08 60.8 115 29.6
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 8.1e-08 60.8 122 27.9
QL04p021054 Quercus lobata HOM05D000688 ORTHO05D005697 8.1e-08 60.8 107 32.7
QL06p046108 Quercus lobata HOM05D028670 ORTHO05D000167 8.1e-08 60.8 113 33.6
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 8.1e-08 60.8 118 30.5
CANSAT11G1907 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-07 60.5 126 27.8
Atru.chr12.2225 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 120 30.8
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-07 60.1 118 28.0
Atru.chr7.1272 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-07 59.7 127 32.3
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.8e-07 59.7 119 31.1
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-07 59.3 126 29.4
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 2.4e-07 59.3 123 29.3
Ah.08g219170 Amaranthus hybridus HOM05D000003 ORTHO05D000004 2.4e-07 59.3 118 31.4
CiPaw.15G048300 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.4e-07 59.3 104 30.8
QL07p015088 Quercus lobata HOM05D000003 ORTHO05D000167 2.4e-07 59.3 125 31.2
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.4e-07 59.3 88 34.1
Atru.chr6.490 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 125 32.0
Atru.chr7.410 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 126 30.2
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 3.1e-07 58.9 121 29.8
CiPaw.14G093100 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.1e-07 58.9 119 27.7
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-07 58.5 106 28.3
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 5.3e-07 58.2 118 29.7
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 5.3e-07 58.2 115 30.4
QL04p093906 Quercus lobata HOM05D000003 ORTHO05D000004 5.3e-07 58.2 123 30.9
QL10p052676 Quercus lobata HOM05D000003 ORTHO05D000167 5.3e-07 58.2 103 30.1
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 5.3e-07 58.2 122 27.0
Atru.chr7.1911 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-07 57.8 128 30.5
CiPaw.01G096600 Carya illinoinensis HOM05D000003 ORTHO05D000167 6.9e-07 57.8 119 33.6
CiPaw.08G120100 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.9e-07 57.8 115 31.3
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 6.9e-07 57.8 101 31.7
QL07p039728 Quercus lobata HOM05D000003 ORTHO05D000004 6.9e-07 57.8 105 34.3
QL09p014828 Quercus lobata HOM05D000003 ORTHO05D000004 6.9e-07 57.8 122 33.6
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 6.9e-07 57.8 120 30.8
TAR648G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 6.9e-07 57.8 102 33.3
Atru.chr13.1831 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-07 57.4 125 31.2
Atru.chr8.183 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-07 57.4 121 29.8
Atru.chr8.265 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-07 57.4 121 29.8
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-07 57.4 126 28.6
QL05p065428 Quercus lobata HOM05D000003 ORTHO05D000004 9.0e-07 57.4 117 30.8
RcHm_v2.0_Chr5g0072911 Rosa chinensis HOM05D000003 ORTHO05D011656 9.0e-07 57.4 124 26.6
Atru.chr9.1321 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-06 57.0 122 30.3
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 1.2e-06 57.0 120 30.8
BolC8t47488H Brassica oleracea HOM05D000003 ORTHO05D001498 1.2e-06 57.0 122 28.7
CANSAT56G3043 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.0 96 34.4
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 1.2e-06 57.0 120 31.7
QL03p058960 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-06 57.0 119 30.3
QL12p032525 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-06 57.0 120 24.2
Sed0000842 Sechium edule HOM05D000003 ORTHO05D000126 1.2e-06 57.0 121 31.4
Atru.chr13.1607 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 56.6 115 30.4
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 117 29.9
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 126 29.4
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 56.6 118 28.0
Atru.chr9.679 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 56.6 115 27.8
EL10Ac9g23004 Beta vulgaris HOM05D000003 ORTHO05D000004 1.5e-06 56.6 125 32.8
Haze_13874 Corylus avellana HOM05D016406 ORTHO05D000167 1.5e-06 56.6 115 31.3
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-06 56.6 118 30.5
RcHm_v2.0_Chr7g0182091 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-06 56.6 122 29.5
QL04p022409 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 56.2 99 32.3
QL09p043312 Quercus lobata HOM05D000003 ORTHO05D000167 2.0e-06 56.2 103 30.1
MBI18_g15860_MAGBIO Magnolia biondii HOM05D001510 ORTHO05D000022 2.6e-06 55.8 110 31.8
QL03p030597 Quercus lobata HOM05D000003 ORTHO05D000167 2.6e-06 55.8 98 33.7
QL03p051530 Quercus lobata HOM05D000003 ORTHO05D000167 2.6e-06 55.8 103 29.1
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.6e-06 55.8 101 33.7
Aqoxy4G01593 Aquilegia oxysepala HOM05D000003 ORTHO05D018399 3.4e-06 55.5 118 26.3
CiPaw.02G051300 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.4e-06 55.5 91 34.1
Sed0008336 Sechium edule HOM05D000003 ORTHO05D000004 3.4e-06 55.5 129 24.8
Atru.chr9.1193 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-06 55.1 125 28.8
CANSAT01G2358 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-06 55.1 131 25.2
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.1 125 26.4
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 4.5e-06 55.1 101 30.7
QL04p035197 Quercus lobata HOM05D000003 ORTHO05D036413 4.5e-06 55.1 96 31.2
QL11p036979 Quercus lobata HOM05D000003 ORTHO05D000167 4.5e-06 55.1 129 27.1
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 5.8e-06 54.7 123 28.5
Aqoxy4G01627 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 5.8e-06 54.7 104 28.8
CANSAT54G0125 Cannabis sativa HOM05D000003 ORTHO05D000167 5.8e-06 54.7 124 26.6
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-06 54.7 129 27.1
QL10p036891 Quercus lobata HOM05D000003 ORTHO05D000004 5.8e-06 54.7 117 29.9
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.8e-06 54.7 115 33.0
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.8e-06 54.7 115 33.0
Atru.chr2.1508 Acer truncatum HOM05D000003 ORTHO05D000006 7.6e-06 54.3 108 34.3
Aqoxy2G01964 Aquilegia oxysepala HOM05D000003 ORTHO05D006738 7.6e-06 54.3 103 29.1
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 7.6e-06 54.3 74 39.2
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 7.6e-06 54.3 130 27.7
QL01p048703 Quercus lobata HOM05D000003 ORTHO05D000167 7.6e-06 54.3 131 30.5
QL08p029218 Quercus lobata HOM05D000003 ORTHO05D000167 7.6e-06 54.3 103 35.9
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-05 53.9 116 29.3
Atru.chr2.1954 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-05 53.9 121 28.1
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 1.0e-05 53.9 74 39.2
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 1.0e-05 53.9 122 33.6
CiPaw.13G119800 Carya illinoinensis HOM05D000003 ORTHO05D013566 1.0e-05 53.9 97 33.0
QL02p011178 Quercus lobata HOM05D001870 ORTHO05D001797 1.0e-05 53.9 61 41.0
QL08p048475 Quercus lobata HOM05D000163 ORTHO05D013581 1.0e-05 53.9 96 28.1
QL11p053095 Quercus lobata HOM05D000003 ORTHO05D000167 1.0e-05 53.9 102 34.3


User provided reference genes

Program Settings