Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.5e-36 155.6 76 100.0
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.7e-19 99.0 63 73.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.5e-15 85.1 60 61.7
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.6e-14 81.3 53 64.2
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 6.2e-14 80.5 60 60.0
CiPaw.13G063000 Carya illinoinensis HOM05D007120 ORTHO05D008881 6.2e-14 80.5 66 66.7
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.1e-14 80.1 61 59.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.2e-13 77.4 53 60.4
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 6.8e-13 77.0 60 58.3
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 8.9e-13 76.6 53 60.4
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.2e-12 76.3 52 63.5
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.0e-12 75.5 64 54.7
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.6e-12 75.1 53 58.5
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 5.8e-12 73.9 52 61.5
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-11 72.8 53 54.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.7e-11 72.4 49 59.2
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.7e-11 72.4 49 59.2
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.2e-11 72.0 59 57.6
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.8e-11 71.2 49 57.1
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 8.4e-11 70.1 52 55.8
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 8.4e-11 70.1 52 55.8
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 8.4e-11 70.1 52 55.8
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.9e-10 68.9 49 59.2
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 2.4e-10 68.6 59 49.2
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.4e-10 68.6 57 50.9
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.2e-10 68.2 52 53.8
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 3.2e-10 68.2 49 59.2
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 9.2e-10 66.6 51 52.9
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 9.2e-10 66.6 52 50.0
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 9.2e-10 66.6 54 55.6
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-09 66.2 44 63.6
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-09 66.2 44 63.6
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 1.2e-09 66.2 49 57.1
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.6e-09 65.9 58 50.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 2.1e-09 65.5 57 54.4
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 2.7e-09 65.1 52 50.0
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 4.6e-09 64.3 49 53.1
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.6e-09 64.3 49 53.1
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 7.8e-09 63.5 67 46.3
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.0e-08 63.2 57 49.1
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 1.0e-08 63.2 60 48.3
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.0e-08 63.2 52 48.1
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 1.3e-08 62.8 64 50.0
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.3e-08 62.8 54 48.1
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.7e-08 62.4 53 50.9
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.7e-08 62.4 57 47.4
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.7e-08 62.4 57 47.4
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.7e-08 62.4 53 50.9
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.7e-08 62.4 52 53.8
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.7e-08 62.4 57 47.4
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.3e-08 62.0 54 48.1
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 3.0e-08 61.6 47 55.3
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 3.0e-08 61.6 57 47.4
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 3.9e-08 61.2 58 46.6
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 3.9e-08 61.2 47 53.2
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.9e-08 61.2 53 47.2
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 3.9e-08 61.2 47 57.4
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 3.9e-08 61.2 49 55.1
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 5.1e-08 60.8 52 50.0
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 6.6e-08 60.5 51 45.1
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 6.6e-08 60.5 53 49.1
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 8.7e-08 60.1 47 53.2
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-07 59.7 57 43.9
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 1.1e-07 59.7 57 43.9
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 1.1e-07 59.7 57 45.6
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-07 59.7 60 46.7
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.1e-07 59.7 49 49.0
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.1e-07 59.7 47 53.2
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.9e-07 58.9 57 45.6
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.9e-07 58.9 60 46.7
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 3.3e-07 58.2 52 44.2
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 5.6e-07 57.4 53 45.3
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.6e-07 57.4 70 41.4
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 7.3e-07 57.0 52 46.2
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 9.6e-07 56.6 46 54.3
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 9.6e-07 56.6 44 54.5
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 9.6e-07 56.6 47 48.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 9.6e-07 56.6 64 43.8
QL09p041996 Quercus lobata HOM05D031581 ORTHO05D008881 9.6e-07 56.6 45 60.0
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 1.2e-06 56.2 52 48.1
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.6e-06 55.8 46 50.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.6e-06 55.8 46 50.0
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-06 55.5 46 50.0
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-06 55.5 46 50.0
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 2.1e-06 55.5 46 50.0
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 2.1e-06 55.5 47 46.8
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.6e-06 54.7 66 40.9
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 6.2e-06 53.9 43 48.8


User provided reference genes

Program Settings