Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 3.8e-120 434.9 226 100.0
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 2.4e-61 239.6 201 66.2
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 3.8e-51 205.7 203 57.6
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 9.3e-50 201.1 175 65.1
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 1.6e-49 200.3 207 55.1
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 1.0e-48 197.6 213 51.2
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 1.5e-47 193.7 189 57.7
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 2.5e-47 193.0 204 50.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 4.3e-47 192.2 210 51.4
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.6e-44 183.0 214 50.0
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 3.8e-43 179.1 200 49.5
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 2.1e-41 173.3 206 48.1
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.6e-41 172.2 209 46.4
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 1.8e-40 170.2 203 49.8
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 3.9e-40 169.1 205 49.8
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 4.3e-39 165.6 204 50.5
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.1e-37 159.1 215 47.4
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 4.1e-37 159.1 215 47.4
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.2e-36 157.5 160 53.8
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 2.0e-36 156.8 206 44.7
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 3.4e-36 156.0 190 48.4
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 4.5e-36 155.6 172 52.9
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.5e-36 155.6 160 53.1
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 4.5e-36 155.6 186 46.2
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 7.7e-36 154.8 213 46.5
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.9e-35 152.9 182 47.8
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 3.8e-35 152.5 179 49.7
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 8.5e-35 151.4 202 46.5
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 1.2e-33 147.5 163 50.9
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.2e-33 147.5 139 54.7
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.1e-33 146.7 210 47.1
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 2.1e-33 146.7 141 51.8
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.6e-33 146.0 194 43.3
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 7.9e-33 144.8 148 50.0
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 1.8e-32 143.7 170 47.1
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 5.1e-32 142.1 184 42.9
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 5.1e-32 142.1 173 49.1
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.1e-31 141.0 137 52.6
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.1e-31 141.0 173 46.8
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 2.0e-31 140.2 173 48.0
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 2.0e-31 140.2 173 46.2
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 4.4e-31 139.0 203 39.4
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 5.7e-31 138.7 192 40.6
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.4e-31 138.3 154 46.8
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 1.4e-29 134.0 206 44.7
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.8e-29 133.7 193 39.4
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.1e-29 132.9 141 48.2
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.1e-29 132.9 186 42.5
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.1e-29 132.5 137 46.0
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.7e-28 128.3 152 43.4
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 1.7e-27 127.1 183 37.2
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 1.7e-27 127.1 182 36.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.5e-27 125.2 137 46.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 8.5e-27 124.8 144 43.8
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.5e-27 124.8 137 46.0
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.5e-26 124.0 147 46.9
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.9e-26 123.6 141 47.5
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.5e-26 123.2 137 50.4
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.6e-25 120.6 149 43.6
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.1e-25 120.2 138 44.9
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 4.7e-25 119.0 151 43.7
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.7e-25 119.0 190 36.8
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 6.1e-25 118.6 158 42.4
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 4.0e-24 115.9 151 43.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 5.2e-24 115.5 151 43.7
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 5.2e-24 115.5 156 41.7
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 5.2e-24 115.5 164 43.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 6.7e-24 115.2 151 43.7
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.7e-24 115.2 159 40.9
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 6.7e-24 115.2 144 44.4
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 8.8e-24 114.8 151 43.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 8.8e-24 114.8 151 43.0
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 8.8e-24 114.8 147 44.2
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 1.5e-23 114.0 166 41.6
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.7e-22 110.5 182 35.7
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.7e-22 109.4 184 36.4
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 4.1e-21 105.9 146 40.4
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 4.1e-21 105.9 147 44.2
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 9.1e-21 104.8 112 53.6
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-20 104.4 146 39.7
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.6e-20 104.0 90 55.6
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-20 103.6 146 39.0
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.7e-20 103.2 187 37.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.5e-20 102.8 146 39.0
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 4.5e-20 102.4 146 39.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 4.5e-20 102.4 182 37.9
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.3e-19 100.9 124 45.2
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.8e-19 99.4 182 33.0
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 3.8e-19 99.4 92 53.3
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.9e-18 97.1 144 38.2
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 3.6e-17 92.8 91 52.7
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 6.1e-17 92.0 168 36.3
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.0e-17 91.7 91 53.8
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.0e-16 91.3 98 46.9
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.0e-16 91.3 196 30.1
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.8e-16 90.5 149 37.6
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 3.0e-16 89.7 118 42.4
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.0e-15 87.0 131 38.2
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.3e-14 84.3 84 51.2
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.2e-14 83.6 148 33.8
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 2.8e-14 83.2 131 35.9
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 2.8e-14 83.2 131 35.9
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 2.8e-14 83.2 131 35.9
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 2.8e-14 83.2 131 35.9
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 8.3e-14 81.6 150 34.0
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.1e-13 81.3 150 34.0
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 1.1e-13 81.3 147 34.0
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 5.4e-13 79.0 112 39.3
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-12 77.0 130 32.3
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.0e-12 77.0 67 59.7
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 7.7e-12 75.1 70 52.9
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.0e-11 74.7 158 30.4
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-11 74.3 66 57.6
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.3e-11 74.3 66 57.6
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.9e-11 73.2 197 27.4
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 6.5e-11 72.0 79 45.6
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.1e-10 71.2 173 32.4
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.1e-10 71.2 74 47.3
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.2e-10 69.3 66 54.5
Pp3c3_3640 Physcomitrium patens HOM05D022662 ORTHO05D006223 7.2e-10 68.6 166 28.3
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 9.4e-10 68.2 214 29.9
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 1.2e-09 67.8 100 39.0
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.1e-09 67.0 95 35.8
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.1e-09 67.0 91 41.8
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.7e-09 66.6 61 50.8
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 2.7e-09 66.6 100 38.0
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.0e-08 64.7 109 37.6
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 1.4e-08 64.3 89 43.8
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.3e-08 63.5 161 27.3
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.3e-08 63.5 83 37.3
FAN11G2744 Fragaria x ananassa HOM05D005423 ORTHO05D046010 6.8e-08 62.0 55 56.4
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 8.8e-08 61.6 61 49.2
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 8.8e-08 61.6 134 36.6
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 8.8e-08 61.6 136 37.5
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.0e-07 60.5 136 36.8
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.0e-07 60.5 136 36.8
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 2.0e-07 60.5 131 31.3
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 4.4e-07 59.3 135 35.6
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 4.4e-07 59.3 136 36.8
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.4e-07 59.3 152 32.9
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 4.4e-07 59.3 139 33.1
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 7.5e-07 58.5 114 35.1
FvH4_3g19970 Fragaria vesca HOM05D005423 ORTHO05D046010 9.8e-07 58.2 55 54.5
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 9.8e-07 58.2 169 31.4
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 9.8e-07 58.2 191 31.4
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.7e-06 57.4 101 36.6
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-06 57.0 139 32.4
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.8e-06 56.6 114 37.7
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 2.8e-06 56.6 101 36.6
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 3.7e-06 56.2 179 29.6
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 3.7e-06 56.2 41 58.5
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 3.7e-06 56.2 146 31.5
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.9e-06 55.8 109 30.3
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 4.9e-06 55.8 103 31.1
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 4.9e-06 55.8 157 29.9
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 4.9e-06 55.8 109 33.9
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 4.9e-06 55.8 174 28.7
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 6.3e-06 55.5 114 28.9
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 8.3e-06 55.1 135 32.6
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 8.3e-06 55.1 41 58.5


User provided reference genes

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