Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.3e-234 814.3 413 100.0
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.0e-203 713.4 412 89.1
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 6.7e-171 604.4 413 73.8
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 4.8e-169 598.2 409 74.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.8e-160 569.7 412 69.2
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.4e-160 569.3 428 69.2
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 5.9e-159 564.7 413 67.1
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 8.5e-158 560.8 410 67.8
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 2.3e-155 552.7 412 67.7
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 1.5e-154 550.1 413 66.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 7.7e-151 537.7 412 64.1
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 1.7e-150 536.6 413 65.4
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.5e-149 532.7 414 65.5
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.3e-147 526.2 416 62.5
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 8.8e-147 524.2 414 64.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.5e-146 523.5 414 64.3
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 3.7e-145 518.8 412 63.1
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 4.8e-145 518.5 414 64.3
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 8.2e-145 517.7 434 62.0
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 5.3e-144 515.0 412 64.1
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.2e-143 513.8 412 62.4
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.2e-143 513.8 412 61.2
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.5e-143 511.9 412 65.8
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.4e-139 500.4 416 61.5
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.4e-139 500.4 411 61.3
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 4.0e-139 498.8 413 61.0
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 5.2e-139 498.4 413 62.7
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.5e-138 496.9 407 61.9
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.4e-138 495.7 449 59.5
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 5.7e-138 495.0 412 60.4
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 5.7e-138 495.0 412 60.9
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 2.4e-136 489.6 412 60.0
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 3.1e-136 489.2 414 59.9
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 6.5e-134 481.5 414 58.7
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 8.5e-134 481.1 412 59.7
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 8.0e-132 474.6 412 59.2
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 5.2e-131 471.9 412 59.5
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.0e-130 469.9 425 60.2
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 3.4e-130 469.2 412 58.0
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 1.3e-129 467.2 411 56.2
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 6.3e-129 464.9 418 56.5
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 9.2e-128 461.1 415 57.6
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.2e-127 460.7 404 57.4
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.5e-127 458.8 413 59.6
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.2e-124 450.7 404 57.9
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.0e-123 445.7 413 57.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.6e-122 443.0 415 54.5
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 7.5e-122 441.4 411 56.4
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 7.5e-122 441.4 414 55.3
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-121 440.7 416 57.7
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 3.7e-121 439.1 412 52.2
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.6e-119 433.7 415 54.0
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 6.6e-118 428.3 417 54.4
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 3.3e-117 426.0 412 55.3
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 3.3e-117 426.0 443 51.2
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 2.3e-115 419.9 410 53.7
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.3e-115 419.9 407 53.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.2e-114 417.5 413 55.4
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.4e-112 410.6 419 51.6
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 3.2e-112 409.5 420 51.2
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 3.2e-112 409.5 432 51.4
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 4.1e-112 409.1 420 51.2
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 4.1e-112 409.1 324 63.6
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 5.4e-112 408.7 411 51.6
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 1.3e-110 404.1 419 49.9
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 1.9e-109 400.2 414 51.4
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 2.5e-109 399.8 320 61.2
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 3.3e-109 399.4 426 50.5
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 2.8e-108 396.4 375 57.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.6e-108 396.0 417 53.5
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 6.8e-107 391.7 413 50.6
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 6.8e-107 391.7 413 50.6
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 1.5e-106 390.6 342 57.0
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 1.3e-105 387.5 412 49.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.6e-103 380.6 413 50.6
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 2.1e-103 380.2 413 50.6
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 2.7e-103 379.8 322 61.2
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 7.8e-103 378.3 413 50.4
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.7e-102 377.1 429 50.1
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 6.6e-102 375.2 412 47.3
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 8.6e-102 374.8 436 46.1
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.9e-101 373.6 412 48.3
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 3.3e-101 372.9 412 48.5
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 2.8e-100 369.8 353 53.5
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 2.3e-99 366.7 405 47.9
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.2e-98 364.4 414 45.2
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 1.6e-95 354.0 376 50.8
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.1e-91 341.3 408 46.6
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.2e-90 337.8 324 52.2
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 8.4e-89 331.6 403 47.9
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 7.3e-85 318.5 172 94.8
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.8e-84 316.6 236 66.1
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 2.2e-81 307.0 251 61.4
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.9e-80 303.9 404 41.3
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 9.3e-80 301.6 260 56.9
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.1e-79 300.4 359 46.2
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 7.6e-74 282.0 257 55.3
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.8e-70 270.8 276 55.8
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 2.6e-66 256.9 274 55.1
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.0e-65 255.0 436 35.6
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.5e-61 240.4 158 71.5
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.9e-53 214.2 154 72.7
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.4e-51 208.0 133 80.5
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 3.8e-49 199.9 140 70.0
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.0e-46 191.8 159 62.3
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 3.9e-46 189.9 159 64.2
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.6e-42 177.2 118 69.5
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 5.9e-34 149.4 107 62.6
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 1.7e-20 104.8 87 60.9
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 3.7e-20 103.6 90 60.0
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.3e-17 95.1 66 63.6
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 4.7e-15 86.7 68 64.7
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.0e-09 68.9 42 69.0
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.6e-07 61.6 49 61.2


User provided reference genes

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