Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1747.6 890 100.0
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 0.0e+00 1145.2 883 69.3
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 0.0e+00 1141.7 882 72.1
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 0.0e+00 1135.2 883 69.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 0.0e+00 1121.3 888 68.0
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.2e-203 713.4 925 47.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.8e-197 693.7 925 46.9
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.1e-186 657.9 913 46.9
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.8e-184 650.6 924 45.5
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.4e-181 640.2 894 44.2
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 5.8e-180 635.6 951 42.4
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.5e-178 630.2 959 43.0
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 4.6e-177 625.9 917 45.1
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 3.8e-171 606.3 907 43.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.2e-170 603.2 889 45.2
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.2e-169 601.3 889 44.9
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.1e-169 600.5 887 44.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.1e-169 599.0 894 43.3
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.5e-167 594.3 894 43.2
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 8.5e-163 578.6 804 46.0
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 4.4e-159 566.2 901 41.4
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.1e-157 560.1 778 44.2
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 5.3e-157 559.3 913 40.4
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 3.8e-155 553.1 920 41.8
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 3.5e-148 530.0 944 39.4
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.2e-146 522.3 894 39.8
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 9.7e-143 511.9 913 41.5
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.8e-141 507.7 902 39.1
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.1e-141 505.4 911 40.3
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 2.0e-140 504.2 1017 36.6
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.7e-140 503.8 896 40.2
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 4.5e-140 503.1 729 44.7
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 8.0e-137 492.3 884 39.3
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-136 491.9 880 40.0
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 5.2e-136 489.6 637 45.8
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 4.4e-135 486.5 879 40.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 4.8e-134 483.0 894 39.3
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.8e-134 483.0 877 40.5
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.1e-133 480.3 768 41.1
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.1e-133 480.3 894 39.6
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 3.8e-131 473.4 916 37.3
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 5.0e-131 473.0 910 37.6
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.5e-130 471.5 888 38.5
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.8e-129 467.2 879 38.9
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.4e-128 464.9 920 38.3
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 2.4e-125 454.1 891 36.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.6e-121 441.4 902 37.6
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.7e-118 430.3 827 38.5
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.4e-117 428.3 907 36.9
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.4e-117 427.6 967 33.7
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.6e-116 424.9 913 35.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.1e-114 418.7 908 35.7
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 3.3e-114 417.2 921 36.0
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.6e-113 414.8 889 34.8
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.1e-113 414.5 830 37.3
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 4.7e-113 413.3 928 34.7
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 2.0e-111 407.9 928 34.4
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 8.3e-110 402.5 918 34.5
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.9e-109 401.4 913 35.8
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.2e-104 383.3 913 33.1
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 8.9e-104 382.5 707 37.9
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 5.8e-103 379.8 910 32.7
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.3e-102 378.6 926 33.7
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.7e-102 378.3 912 34.3
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 2.1e-100 371.3 881 35.0
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 8.1e-97 359.4 939 32.1
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 6.8e-96 356.3 799 34.7
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.5e-95 355.1 859 33.6
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.9e-94 350.9 890 32.6
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.9e-94 350.9 871 34.7
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 4.9e-94 350.1 856 33.1
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 8.4e-94 349.4 862 32.9
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 4.7e-89 333.6 915 31.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 8.1e-89 332.8 920 32.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.1e-88 332.4 864 32.9
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 9.0e-88 329.3 850 32.9
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 2.4e-85 321.2 855 31.9
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 3.2e-85 320.9 855 31.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 5.4e-85 320.1 912 31.6
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 4.6e-84 317.0 854 31.5
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 6.0e-84 316.6 868 32.8
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.7e-83 315.1 851 31.5
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 6.6e-83 313.2 854 31.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.3e-81 308.9 774 32.8
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 4.8e-81 307.0 855 31.5
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 3.1e-80 304.3 765 32.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 3.1e-80 304.3 847 30.1
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.5e-79 302.0 854 30.9
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 4.5e-79 300.4 710 33.4
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.8e-75 288.5 844 31.4
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.0e-75 287.7 741 32.5
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 3.9e-75 287.3 904 28.5
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.0e-71 275.0 850 29.5
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.0e-71 275.0 889 29.0
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.6e-71 273.1 732 32.4
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 6.4e-70 270.0 658 34.5
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.4e-69 268.1 753 31.5
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 4.2e-69 267.3 904 28.4
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-67 261.9 845 30.1
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-66 258.1 442 38.7
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-66 258.1 442 38.7
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.1e-65 255.0 442 38.5
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 2.1e-65 255.0 689 31.5
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 6.5e-62 243.4 864 29.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.9e-61 241.9 833 29.2
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 8.7e-59 233.0 893 26.7
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 4.3e-58 230.7 842 28.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.1e-56 226.1 969 26.2
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.9e-53 215.3 659 31.1
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 4.5e-39 167.5 517 29.4
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 3.8e-38 164.5 218 43.6
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.0e-35 156.4 922 24.6
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 2.2e-33 148.7 157 49.7
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 3.7e-33 147.9 218 40.8
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 7.0e-32 143.7 396 29.3
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 3.6e-28 131.3 397 32.2
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.7e-25 122.5 323 30.7
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.2e-23 116.3 335 30.4
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.0e-22 110.9 322 28.6
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 7.2e-21 107.1 263 31.6
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.6e-20 105.9 263 31.6
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.4e-19 102.8 877 21.4
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 8.3e-17 93.6 263 28.9
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 2.0e-15 89.0 233 30.0
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.7e-14 85.9 88 47.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 3.3e-13 81.6 87 50.6
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.3e-09 69.7 62 53.2
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.6e-07 62.8 93 38.7
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-07 62.0 91 42.9
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-07 62.0 91 42.9
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 2.7e-07 62.0 91 42.9
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 6.6e-06 57.4 213 31.0
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 8.6e-06 57.0 249 24.5


User provided reference genes

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