Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.3e-269 932.6 484 100.0
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.1e-240 833.9 490 87.6
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.7e-227 792.0 489 85.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 6.5e-226 787.3 488 85.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 9.4e-225 783.5 485 83.5
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 4.0e-223 778.1 489 82.8
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.6e-222 775.4 498 80.9
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 9.8e-222 773.5 490 81.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 4.8e-221 771.2 487 81.3
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.8e-221 771.2 487 81.7
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 4.5e-219 764.6 481 81.1
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 7.7e-219 763.8 492 81.3
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.0e-218 763.5 490 80.2
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.7e-218 762.7 492 79.1
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.7e-218 762.7 483 80.5
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.3e-218 762.3 449 86.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.9e-218 761.9 490 79.4
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 3.8e-218 761.5 480 81.2
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 5.0e-218 761.1 439 86.6
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 5.0e-218 761.1 445 85.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 5.0e-218 761.1 445 86.5
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 6.5e-218 760.8 441 86.8
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.1e-217 760.0 442 86.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.1e-217 760.0 488 80.9
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.5e-217 759.6 434 88.5
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.5e-217 759.6 483 79.9
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.5e-217 758.8 451 84.9
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 2.5e-217 758.8 466 82.2
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 7.2e-217 757.3 460 84.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.1e-216 755.7 466 81.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.1e-216 754.2 435 87.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 6.1e-216 754.2 432 87.5
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 6.1e-216 754.2 490 78.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 8.0e-216 753.8 449 83.7
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.4e-215 753.1 483 79.9
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.8e-215 752.7 484 79.3
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.3e-215 752.3 466 81.8
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 4.0e-215 751.5 499 77.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 5.2e-215 751.1 490 77.8
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 8.8e-215 750.4 445 84.7
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-214 750.0 439 86.6
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.0e-214 749.2 436 86.5
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.4e-214 748.0 444 85.6
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 9.8e-214 746.9 492 76.8
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.3e-213 746.5 440 85.5
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.7e-213 746.1 442 85.1
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.2e-213 745.7 437 85.4
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 2.8e-213 745.3 449 83.5
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 6.3e-213 744.2 436 84.4
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.1e-212 743.4 491 77.8
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.4e-212 743.0 489 77.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.4e-212 743.0 480 79.4
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-212 743.0 466 81.1
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.4e-212 742.3 452 81.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.4e-212 741.1 437 84.0
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 2.0e-211 739.2 453 82.1
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.7e-211 738.8 441 83.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 2.7e-211 738.8 439 84.7
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 4.5e-211 738.0 453 81.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 1.3e-210 736.5 437 83.3
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.3e-210 736.5 437 84.4
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.3e-210 736.5 500 78.6
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.7e-210 736.1 476 77.9
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 2.3e-210 735.7 439 84.3
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 3.8e-210 734.9 439 84.1
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 8.6e-210 733.8 439 82.9
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.1e-209 733.4 439 84.1
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 3.3e-209 731.9 444 83.3
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 3.3e-209 731.9 481 78.0
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.3e-209 730.7 440 84.3
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 7.3e-209 730.7 439 82.9
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 9.5e-209 730.3 436 83.0
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.1e-208 729.2 442 81.7
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-208 729.2 437 82.4
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.1e-208 729.2 437 82.4
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 2.8e-208 728.8 436 82.8
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 3.6e-208 728.4 437 82.2
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.7e-208 728.0 436 82.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 4.7e-208 728.0 437 82.6
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 4.7e-208 728.0 437 82.6
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 4.7e-208 728.0 436 84.2
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 6.1e-208 727.6 439 82.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-207 726.5 437 82.2
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.4e-207 726.5 439 81.8
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-207 726.1 437 82.2
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.8e-207 726.1 439 81.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 4.0e-207 724.9 436 82.1
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.0e-207 724.9 493 77.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 8.9e-207 723.8 436 82.3
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.5e-206 723.0 452 81.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.0e-206 722.6 436 83.3
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.6e-206 722.2 436 83.3
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 7.5e-206 720.7 439 81.1
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 7.5e-206 720.7 439 81.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.3e-205 719.9 435 83.0
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.7e-205 718.4 445 82.2
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.8e-204 716.1 432 81.5
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.8e-204 716.1 439 80.6
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-204 716.1 493 76.7
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.4e-204 715.7 485 77.3
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 3.2e-204 715.3 432 82.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.2e-204 713.8 432 81.2
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.6e-203 713.0 435 82.8
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.7e-203 712.2 435 81.8
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.7e-202 709.5 435 80.7
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.7e-202 709.5 435 81.6
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 3.9e-202 708.4 459 79.1
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.1e-201 706.8 435 80.0
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.9e-201 706.1 431 81.2
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.5e-201 705.7 431 81.7
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.6e-200 701.8 431 80.7
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.0e-199 698.4 448 80.1
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.4e-197 691.0 437 78.9
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.4e-196 689.9 413 83.8
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 7.8e-195 684.1 444 76.6
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.7e-187 659.1 386 84.7
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.2e-184 650.2 432 73.8
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-183 647.1 433 76.2
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.7e-179 632.5 438 71.9
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.6e-179 631.7 432 72.7
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 5.1e-178 628.2 427 74.7
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 8.1e-176 620.9 469 68.2
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.4e-172 610.1 466 67.0
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.4e-167 592.8 427 69.6
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.5e-166 590.1 356 82.6
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 8.4e-165 584.3 438 68.0
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 7.4e-161 571.2 504 64.3
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.4e-156 557.0 428 67.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.7e-149 533.5 318 85.2
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 3.8e-149 532.3 315 85.1
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.9e-135 485.0 317 81.4
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-116 423.7 330 68.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.3e-113 412.9 443 49.9
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 3.3e-113 412.9 258 81.4
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 4.4e-113 412.5 258 79.8
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 2.8e-112 409.8 233 86.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.6e-110 404.1 258 77.9
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 2.7e-94 350.1 238 77.7
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 3.8e-93 346.3 182 94.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 8.9e-90 335.1 405 52.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.2e-86 324.7 201 82.6
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 2.6e-81 307.0 231 74.5
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 3.4e-81 306.6 177 83.6
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.0e-73 280.8 182 78.0
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 7.6e-65 252.3 426 38.7
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 2.9e-64 250.4 217 61.3
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.1e-63 248.4 295 45.4
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 3.2e-63 246.9 217 61.3
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 9.2e-63 245.4 217 60.8
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 6.6e-61 239.2 239 56.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-57 228.4 122 91.0
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.4e-57 226.9 215 57.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.9e-50 202.6 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 9.6e-44 182.2 185 56.8
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.5e-41 173.3 95 88.4
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 5.1e-37 159.8 87 88.5
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 4.6e-30 136.7 160 51.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 9.7e-28 129.0 133 46.6
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 5.0e-24 116.7 76 73.7
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.1e-23 115.5 140 51.4
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 1.0e-21 109.0 67 77.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.0e-21 109.0 125 52.0
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 4.3e-20 103.6 206 36.9
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 1.8e-18 98.2 59 83.1
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 5.0e-16 90.1 57 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.5e-15 87.8 66 68.2
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 3.2e-15 87.4 75 61.3
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 3.3e-12 77.4 45 84.4
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 7.4e-12 76.3 48 79.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 9.7e-12 75.9 49 77.6
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 6.3e-11 73.2 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.1e-10 72.4 46 73.9
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 5.9e-09 66.6 37 89.2
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 6.5e-08 63.2 61 60.7
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 6.5e-08 63.2 55 67.3
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.7e-06 57.8 31 80.6


User provided reference genes

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