Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 8.2e-188 660.2 330 100.0
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 1.7e-164 582.8 328 86.3
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 2.0e-146 522.7 325 77.8
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.0e-145 520.4 323 78.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.9e-145 518.5 325 76.3
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.8e-143 512.3 324 75.3
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.2e-141 506.9 323 75.5
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.6e-141 505.8 325 76.3
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 2.6e-141 505.8 325 77.5
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 3.7e-140 501.9 323 75.2
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 3.2e-139 498.8 328 74.4
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.2e-139 497.3 326 74.5
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 9.2e-139 497.3 326 72.1
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 1.6e-138 496.5 323 75.2
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.7e-138 495.7 330 72.4
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 3.5e-138 495.4 328 73.2
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.6e-138 495.0 326 73.6
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.3e-137 493.4 326 73.3
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.3e-137 493.4 330 72.7
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 6.6e-137 491.1 329 73.6
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 6.6e-137 491.1 329 73.9
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.5e-136 490.0 326 70.9
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.3e-136 488.4 329 73.3
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.3e-136 488.4 329 72.9
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 9.5e-136 487.3 326 70.9
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.2e-135 486.9 329 72.9
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 3.6e-135 485.3 323 73.4
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.1e-134 483.8 325 72.9
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.8e-134 483.0 329 71.4
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.3e-134 482.6 329 72.9
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 4.0e-134 481.9 323 72.8
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 5.2e-134 481.5 339 70.8
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 6.8e-134 481.1 323 73.4
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 6.8e-134 481.1 326 70.9
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 8.9e-134 480.7 326 72.4
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.2e-133 480.3 323 73.4
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.2e-133 480.3 326 70.6
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.5e-133 479.9 359 67.7
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 2.6e-133 479.2 323 73.1
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.6e-133 479.2 326 72.1
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 7.5e-133 477.6 323 72.8
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 7.5e-133 477.6 326 72.1
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 7.5e-133 477.6 323 73.1
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 7.5e-133 477.6 326 71.8
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 7.5e-133 477.6 323 72.8
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 9.9e-133 477.2 296 78.0
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 2.9e-132 475.7 326 68.7
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 3.7e-132 475.3 323 70.3
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 8.3e-132 474.2 330 73.9
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.4e-131 473.4 325 71.1
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 2.4e-131 472.6 325 70.5
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 5.4e-131 471.5 356 67.1
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.2e-130 470.3 323 70.9
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.2e-130 470.3 324 70.1
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 6.0e-130 468.0 323 71.8
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 7.8e-130 467.6 323 70.0
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.3e-129 466.8 330 66.4
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.7e-129 466.5 325 67.4
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.7e-129 466.5 326 68.1
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.9e-129 465.3 323 68.7
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 5.1e-129 464.9 327 67.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 6.6e-129 464.5 325 67.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.6e-129 464.5 330 66.7
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.5e-128 462.6 325 68.9
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 3.3e-128 462.2 331 67.4
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.3e-128 461.8 331 68.3
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.6e-127 459.9 324 69.8
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.8e-127 459.1 325 68.0
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 4.7e-127 458.4 331 66.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.4e-126 456.8 326 70.6
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 3.1e-126 455.7 327 66.1
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.2e-125 453.8 347 67.4
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 3.8e-124 448.7 312 71.2
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 6.4e-124 448.0 325 67.4
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.1e-122 443.0 295 72.9
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 6.0e-122 441.4 323 69.3
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.0e-122 441.4 344 67.2
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 7.8e-122 441.0 361 59.8
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.3e-121 440.3 372 60.2
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.7e-121 439.9 326 68.4
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.1e-120 437.2 344 66.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.5e-120 436.8 325 65.8
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.3e-120 435.6 326 65.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.3e-120 435.6 325 67.1
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.6e-119 433.3 379 60.9
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.2e-119 431.4 328 66.8
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 3.4e-117 425.6 328 64.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 2.5e-112 409.5 292 70.2
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 9.6e-112 407.5 325 61.8
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.4e-110 403.7 325 61.2
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.5e-109 400.2 325 64.0
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.3e-108 397.1 323 61.0
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.3e-104 382.1 276 68.1
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.6e-103 380.2 325 60.3
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.8e-103 379.4 326 59.2
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.4e-102 377.1 262 66.4
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 9.0e-102 374.4 247 75.3
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 3.8e-100 369.0 232 75.9
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 6.5e-100 368.2 255 72.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.6e-98 363.6 266 65.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 5.1e-97 358.6 328 55.2
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 6.9e-94 348.2 294 58.8
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.3e-92 344.0 332 54.8
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.9e-88 330.1 185 82.7
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 8.2e-87 324.7 327 52.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 3.7e-79 299.3 190 71.1
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.1e-75 287.7 213 64.3
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.9e-75 287.0 333 46.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 3.2e-75 286.2 332 45.5
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.2e-74 284.3 327 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.7e-74 283.1 325 46.8
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 2.3e-73 280.0 225 61.3
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 7.2e-67 258.5 160 71.2
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 8.5e-60 235.0 323 44.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.0e-57 226.1 169 66.9
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.8e-52 209.5 152 62.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.9e-51 207.2 166 63.9
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.5e-51 206.8 203 61.1
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 9.4e-51 204.9 118 74.6
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.0e-44 184.9 361 34.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 7.5e-40 168.7 195 43.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 6.3e-39 165.6 143 60.1
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.1e-38 164.9 349 30.9
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.5e-35 153.7 144 56.9
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 4.7e-34 149.4 315 33.7
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.9e-28 129.8 120 58.3
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 4.3e-27 126.3 354 31.1
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.7e-20 104.4 75 68.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.9e-19 100.9 245 30.6
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 6.8e-17 92.4 60 70.0
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.3e-15 88.2 59 72.9
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 7.1e-14 82.4 65 66.2
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 6.0e-13 79.3 59 52.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 2.1e-10 70.9 60 50.0
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 4.0e-09 66.6 85 45.9
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 8.9e-09 65.5 66 47.0


User provided reference genes

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