Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.5e-96 355.5 187 100.0
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 9.1e-67 257.3 189 78.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 7.7e-66 254.2 188 75.0
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.5e-64 250.0 165 81.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 6.1e-63 244.6 180 73.9
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 3.3e-61 238.8 187 73.3
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 4.4e-61 238.4 186 72.6
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 3.7e-60 235.3 187 72.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 6.3e-60 234.6 188 72.9
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 3.1e-59 232.3 188 71.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.1e-59 232.3 188 71.3
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 4.1e-59 231.9 187 73.3
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.1e-59 231.9 188 71.3
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.1e-59 230.7 188 70.7
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.2e-58 230.3 181 71.8
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.6e-58 229.2 187 71.1
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 5.9e-58 228.0 190 68.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 2.9e-57 225.7 188 71.3
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.0e-57 224.9 188 69.1
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.9e-56 223.0 158 75.9
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.6e-55 219.9 185 68.6
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.1e-55 219.5 187 68.4
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 3.6e-55 218.8 187 67.9
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.7e-55 218.4 188 63.8
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 8.0e-55 217.6 174 68.4
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 3.0e-54 215.7 158 72.2
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 5.2e-54 214.9 216 63.0
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 5.2e-54 214.9 188 66.5
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 8.8e-54 214.2 173 68.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.2e-53 213.8 166 74.1
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.2e-53 213.8 187 68.4
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.5e-53 213.4 166 72.9
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.5e-53 213.4 187 64.7
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.4e-53 212.2 187 63.6
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.4e-53 211.8 187 62.6
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.7e-52 209.9 186 65.1
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.4e-51 206.8 149 77.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.1e-51 205.3 209 60.3
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 4.1e-51 205.3 188 66.0
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 9.1e-51 204.1 188 64.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 9.1e-51 204.1 185 63.2
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-50 203.4 149 75.2
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 2.7e-50 202.6 187 63.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.7e-50 202.6 144 77.1
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.5e-50 201.8 234 56.8
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 4.5e-50 201.8 189 64.0
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 5.9e-50 201.4 165 66.1
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 7.7e-50 201.1 213 59.2
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.0e-49 200.7 157 68.8
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.0e-49 200.7 187 63.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 3.8e-49 198.7 172 68.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 3.8e-49 198.7 188 62.8
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.8e-49 198.7 200 60.5
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 8.5e-49 197.6 188 65.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.1e-48 197.2 188 65.4
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.5e-48 196.1 188 62.2
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-48 194.1 166 67.5
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.2e-47 193.7 136 75.7
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.6e-47 193.4 165 69.7
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 2.7e-47 192.6 217 57.1
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.7e-47 192.6 188 62.8
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 4.7e-47 191.8 183 62.8
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 6.1e-47 191.4 206 59.7
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.0e-46 190.7 165 67.3
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.8e-46 189.9 144 71.5
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.6e-45 186.0 153 69.3
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 2.6e-45 186.0 157 66.9
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.4e-45 185.3 136 72.1
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 7.5e-45 184.5 164 62.2
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.3e-44 183.7 149 68.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.7e-44 182.2 184 60.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.7e-44 182.2 153 67.3
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 6.3e-44 181.4 184 62.5
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 8.3e-44 181.0 187 59.9
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.8e-43 179.9 198 57.1
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 3.1e-43 179.1 149 70.5
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 4.1e-43 178.7 206 54.9
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 9.1e-43 177.6 186 60.8
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.7e-42 176.0 188 59.6
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 3.5e-42 175.6 183 60.7
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.3e-41 173.7 181 59.7
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-41 171.8 188 59.6
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.0e-41 171.8 188 59.6
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 8.6e-41 171.0 190 57.9
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 3.3e-40 169.1 124 68.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.3e-40 168.7 130 69.2
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 5.6e-40 168.3 155 63.9
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.6e-40 168.3 165 63.6
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.6e-39 166.8 135 68.9
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.6e-39 166.8 166 60.2
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 2.8e-39 166.0 155 63.2
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 4.7e-39 165.2 186 55.9
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 6.1e-39 164.9 225 48.0
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 2.3e-38 162.9 164 62.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 2.3e-38 162.9 135 65.2
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 8.9e-38 161.0 185 56.8
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.4e-37 159.1 149 64.4
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.2e-36 156.4 98 79.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 2.9e-36 156.0 164 60.4
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 4.9e-36 155.2 179 54.7
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 8.3e-36 154.5 149 63.1
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.1e-35 154.1 224 50.0
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.6e-34 150.2 167 56.3
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.7e-34 149.4 165 57.6
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 3.5e-34 149.1 166 54.8
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 7.8e-34 147.9 112 73.2
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.7e-33 146.7 184 55.4
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.7e-33 146.7 168 57.1
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.3e-33 146.4 162 58.0
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.9e-33 145.6 91 80.2
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 8.6e-33 144.4 141 65.2
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 3.3e-32 142.5 183 53.0
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 3.3e-32 142.5 183 53.0
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.3e-32 142.5 163 54.0
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.3e-32 142.1 100 73.0
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 7.3e-32 141.4 149 59.7
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 9.5e-32 141.0 162 54.9
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.2e-31 140.6 201 48.8
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 3.1e-30 136.0 126 58.7
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 8.9e-30 134.4 163 55.2
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.0e-29 133.3 217 49.3
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.6e-29 132.9 162 49.4
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.3e-28 130.6 147 52.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 4.9e-28 128.6 166 53.6
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 8.3e-28 127.9 176 51.1
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 4.1e-27 125.6 183 47.0
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.7e-26 122.9 125 57.6
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.7e-25 120.2 148 50.7
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.9e-24 116.7 160 49.4
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 7.3e-24 114.8 147 53.1
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 2.8e-23 112.8 181 45.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.8e-22 110.2 180 45.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 2.3e-22 109.8 151 49.7
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 4.0e-22 109.0 186 44.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 2.2e-20 103.2 208 39.4
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.7e-20 102.4 93 68.8
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.7e-17 93.6 58 79.3
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 8.6e-17 91.3 100 53.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 8.6e-17 91.3 163 42.9
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.9e-12 75.5 87 57.5
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 9.6e-08 61.2 77 53.2
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.6e-07 59.3 66 54.5
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.2e-07 58.5 96 45.8


User provided reference genes

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