Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.1e-63 246.5 129 100.0
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.2e-41 173.3 106 84.9
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 6.1e-38 161.0 106 76.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.1e-38 161.0 106 76.4
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.0e-37 160.2 105 77.1
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.0e-37 160.2 106 75.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.0e-37 160.2 108 75.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.4e-37 159.8 105 77.1
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.4e-37 159.8 105 78.1
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.4e-37 159.8 114 73.7
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 2.3e-37 159.1 106 74.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.3e-37 159.1 106 74.5
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.3e-37 159.1 105 77.1
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 5.2e-37 157.9 93 84.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.2e-37 157.9 123 69.1
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 6.8e-37 157.5 110 71.8
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.2e-36 156.8 106 75.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 2.0e-36 156.0 105 72.4
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.6e-36 155.6 106 74.5
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 4.4e-36 154.8 106 74.5
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 4.4e-36 154.8 105 73.3
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 7.5e-36 154.1 99 78.8
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.3e-35 153.3 106 73.6
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.3e-35 153.3 105 75.2
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.7e-35 152.9 107 75.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 2.2e-35 152.5 103 72.8
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.8e-35 152.1 110 72.7
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.8e-35 152.1 103 72.8
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 3.7e-35 151.8 105 71.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 4.8e-35 151.4 106 72.6
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 6.3e-35 151.0 106 75.5
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.1e-34 150.2 106 71.7
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.1e-34 150.2 99 75.8
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.4e-34 149.8 107 73.8
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 2.4e-34 149.1 106 73.6
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.4e-34 149.1 105 69.5
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 7.0e-34 147.5 106 70.8
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-33 146.7 103 73.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-33 146.7 103 73.8
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.2e-33 146.7 114 71.1
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.6e-33 146.4 103 69.9
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.0e-33 146.0 106 67.9
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 2.7e-33 145.6 103 70.9
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 7.7e-33 144.1 107 72.0
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 7.7e-33 144.1 106 67.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 7.7e-33 144.1 119 65.5
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-32 143.3 103 71.8
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.3e-32 143.3 105 67.6
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.7e-32 142.9 107 69.2
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.7e-32 142.9 131 61.1
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.7e-32 142.9 103 68.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.3e-32 142.5 103 70.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.0e-32 141.4 105 70.5
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.1e-31 140.2 105 68.6
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-31 140.2 103 70.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-31 140.2 103 70.9
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.1e-31 140.2 107 68.2
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.5e-31 139.8 107 69.2
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.5e-31 139.8 117 62.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.9e-31 139.4 105 69.5
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.5e-31 139.0 105 68.6
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.5e-31 139.0 108 65.7
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 7.2e-31 137.5 107 67.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 9.5e-31 137.1 107 66.4
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.2e-30 136.7 103 69.9
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.6e-30 136.3 109 65.1
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 2.1e-30 136.0 108 63.9
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.8e-30 135.6 107 64.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.6e-30 135.2 106 65.1
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 3.6e-30 135.2 106 64.2
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.6e-30 135.2 111 64.0
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 3.6e-30 135.2 105 68.6
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.6e-30 135.2 104 65.4
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.7e-30 134.8 106 63.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 8.0e-30 134.0 107 67.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 8.0e-30 134.0 105 64.8
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.0e-29 133.7 105 61.9
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.4e-29 133.3 121 57.0
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.8e-29 132.9 106 67.0
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.8e-29 132.9 110 63.6
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.0e-29 132.1 106 64.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.0e-29 132.1 121 57.0
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.0e-29 132.1 121 57.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 3.0e-29 132.1 106 67.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 4.0e-29 131.7 121 56.2
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 4.0e-29 131.7 94 71.3
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 4.0e-29 131.7 84 75.0
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.2e-29 131.3 91 67.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 5.2e-29 131.3 126 58.7
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 5.2e-29 131.3 93 73.1
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.8e-29 131.0 106 65.1
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 8.8e-29 130.6 106 62.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 8.8e-29 130.6 106 62.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 8.8e-29 130.6 106 62.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.5e-28 129.8 101 60.4
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.5e-28 129.8 106 61.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.5e-28 129.8 92 73.9
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.5e-28 129.8 106 61.3
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 2.0e-28 129.4 106 65.1
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 2.6e-28 129.0 106 61.3
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.6e-28 129.0 107 60.7
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 3.4e-28 128.6 102 64.7
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.4e-28 128.6 106 62.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 4.4e-28 128.3 100 62.0
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 4.4e-28 128.3 107 64.5
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 4.4e-28 128.3 107 64.5
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 7.5e-28 127.5 100 62.0
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.2e-27 125.9 92 71.7
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 2.8e-27 125.6 98 64.3
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.8e-26 122.9 93 69.9
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.4e-26 122.5 96 59.4
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 5.4e-26 121.3 97 63.9
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.0e-26 120.9 105 60.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 7.0e-26 120.9 105 60.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.0e-26 120.9 113 57.5
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 3.5e-25 118.6 103 59.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.9e-25 117.9 111 54.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.8e-25 117.5 104 61.5
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.3e-24 116.7 105 58.1
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.7e-24 116.3 109 56.0
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.7e-24 116.3 104 60.6
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.7e-24 116.3 90 67.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 2.3e-24 115.9 110 59.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.9e-24 115.5 107 57.0
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 3.3e-23 112.1 74 82.4
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.3e-23 110.9 91 61.5
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.1e-22 107.8 122 46.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.3e-21 105.9 91 57.1
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.0e-21 105.5 103 54.4
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 5.2e-21 104.8 103 56.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.3e-19 100.1 74 73.0
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.4e-18 96.7 75 72.0
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.6e-17 93.2 74 64.9
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.1e-15 87.0 83 55.4
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 5.6e-15 84.7 100 48.0
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 9.5e-15 84.0 60 71.7
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 2.1e-14 82.8 71 60.6
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 3.6e-14 82.0 61 67.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.6e-14 82.0 52 75.0
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 6.2e-14 81.3 76 61.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.3e-13 79.3 99 46.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.3e-11 73.6 58 56.9
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.2e-11 72.8 85 55.3
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.4e-10 69.3 78 51.3
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 3.2e-10 68.9 74 45.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.5e-09 65.5 70 58.6
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 5.0e-08 61.6 41 73.2
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 2.5e-07 59.3 38 71.1
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 3.6e-06 55.5 34 70.6


User provided reference genes

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