Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.4e-165 586.3 297 100.0
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.6e-89 332.0 297 63.3
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 3.2e-58 229.6 297 47.8
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.1e-57 226.9 296 49.0
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 3.8e-51 206.1 289 41.9
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 4.7e-49 199.1 292 40.8
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 8.0e-49 198.4 292 42.5
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.4e-48 197.6 277 41.2
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.8e-48 197.2 289 40.5
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.2e-48 195.7 297 40.7
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.1e-47 194.5 289 40.5
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.3e-47 193.0 289 40.8
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.3e-47 193.0 284 41.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.8e-46 189.9 289 39.8
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 6.3e-46 188.7 278 42.1
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.3e-46 188.7 353 37.4
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.4e-45 187.6 282 41.1
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.8e-45 187.2 266 41.4
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 7.0e-45 185.3 291 38.1
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.2e-44 184.5 274 42.0
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.0e-44 183.7 353 36.8
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.7e-43 180.6 267 41.9
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 2.2e-43 180.3 266 40.6
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.8e-43 179.5 291 37.5
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 8.5e-43 178.3 287 38.7
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.5e-42 177.6 267 40.4
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 3.2e-42 176.4 292 38.7
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 7.2e-42 175.3 269 39.8
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 2.1e-41 173.7 294 39.5
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.4e-40 171.0 262 37.8
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 3.0e-40 169.9 278 37.4
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 4.0e-40 169.5 266 39.8
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 4.0e-40 169.5 264 36.7
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 8.8e-40 168.3 287 38.0
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 8.8e-40 168.3 286 38.1
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.6e-39 166.8 282 35.8
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 3.4e-39 166.4 275 38.5
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 2.2e-38 163.7 270 38.5
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 4.8e-38 162.5 256 39.1
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 2.0e-36 157.1 288 34.7
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.7e-36 156.8 260 38.8
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 5.9e-36 155.6 275 35.6
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 1.3e-35 154.5 289 34.6
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.7e-35 154.1 283 36.4
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 2.9e-35 153.3 278 36.3
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.1e-34 151.4 291 32.3
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 2.5e-34 150.2 278 35.3
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 4.2e-34 149.4 287 36.2
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.2e-34 149.4 291 32.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 4.2e-34 149.4 272 37.1
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 9.4e-34 148.3 277 33.9
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.2e-33 147.9 298 33.6
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.2e-33 147.9 276 36.2
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.1e-33 147.1 277 34.7
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.7e-33 146.7 276 38.0
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 2.7e-33 146.7 292 35.6
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.7e-33 146.7 292 35.3
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 3.6e-33 146.4 283 35.0
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.6e-33 146.4 277 34.3
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.1e-33 145.6 289 37.7
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.0e-32 144.8 279 31.9
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 1.0e-32 144.8 291 29.9
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 5.2e-32 142.5 125 54.4
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 8.8e-32 141.7 291 32.6
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.2e-31 141.4 285 33.3
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.5e-31 141.0 287 33.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 2.0e-31 140.6 290 32.4
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 3.4e-31 139.8 287 34.1
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 5.7e-31 139.0 289 33.6
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 5.7e-31 139.0 282 33.7
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.7e-30 137.5 287 33.8
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.7e-30 137.5 287 33.1
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.8e-30 136.7 289 33.6
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.8e-30 136.7 289 33.6
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 6.3e-30 135.6 153 50.3
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 6.3e-30 135.6 287 33.1
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.3e-30 135.6 285 32.3
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.3e-30 135.6 285 32.3
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 6.3e-30 135.6 265 34.0
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.1e-29 134.8 287 32.8
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.8e-29 134.0 289 33.2
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 2.4e-29 133.7 292 32.5
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 2.4e-29 133.7 285 33.0
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 3.1e-29 133.3 292 31.8
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 5.4e-29 132.5 291 31.3
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 7.0e-29 132.1 284 33.5
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 9.1e-29 131.7 287 34.1
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.6e-28 131.0 285 31.6
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 2.0e-28 130.6 285 32.3
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 4.5e-28 129.4 285 31.9
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 5.9e-28 129.0 291 29.2
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.0e-27 128.3 172 46.5
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 2.3e-27 127.1 287 32.4
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.9e-27 126.7 286 32.5
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 3.8e-27 126.3 298 32.2
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.1e-26 124.8 285 31.6
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.1e-26 124.8 285 31.6
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.5e-26 124.4 121 52.1
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 2.5e-26 123.6 277 31.0
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.2e-23 114.8 120 50.0
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-22 110.5 142 43.0
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.1e-21 106.3 104 50.0
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.2e-20 104.8 89 55.1
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 3.5e-20 103.2 113 46.0
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 5.6e-18 95.9 290 27.2
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 7.3e-18 95.5 199 31.7
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 2.1e-17 94.0 168 36.9
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 7.5e-15 85.5 83 49.4
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 9.8e-15 85.1 127 38.6
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.4e-13 81.3 135 33.3
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 4.1e-13 79.7 135 33.3
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 2.0e-12 77.4 175 28.6
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 6.0e-12 75.9 89 49.4
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.5e-10 71.2 131 35.9
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.5e-10 70.5 56 60.7
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.2e-09 68.2 67 47.8
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 2.8e-09 67.0 64 46.9
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.1e-08 63.5 64 48.4
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.9e-06 57.0 68 39.7


User provided reference genes

Program Settings