Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 3.4e-153 545.0 288 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.7e-141 506.1 254 96.1
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 5.0e-141 504.6 254 95.7
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 4.7e-139 498.0 255 94.5
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 6.8e-138 494.2 257 92.2
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 3.4e-137 491.9 257 92.6
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.9e-136 488.0 255 92.2
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 6.4e-136 487.6 255 92.9
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.1e-135 486.9 252 92.1
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-135 486.9 256 92.6
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.9e-135 486.1 249 92.4
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-135 486.1 251 93.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.4e-135 485.7 254 91.7
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.4e-135 485.7 254 91.7
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.1e-135 485.0 256 92.6
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 4.1e-135 485.0 253 92.5
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 5.4e-135 484.6 253 92.1
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 7.0e-135 484.2 256 92.6
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.0e-135 484.2 256 92.6
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.6e-134 483.0 253 90.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.6e-134 483.0 254 90.2
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-134 482.6 256 92.2
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.0e-134 482.6 253 91.3
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 4.6e-134 481.5 249 92.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 4.6e-134 481.5 248 94.0
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 6.0e-134 481.1 248 93.5
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 6.0e-134 481.1 253 91.7
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 6.0e-134 481.1 266 89.5
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.0e-133 480.3 256 88.7
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.3e-133 479.9 280 91.1
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 92.4
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.7e-133 479.6 249 92.4
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.3e-133 479.2 255 90.6
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 3.0e-133 478.8 255 90.6
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 3.0e-133 478.8 250 92.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 3.0e-133 478.8 255 90.6
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 3.0e-133 478.8 257 91.1
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.9e-133 478.4 249 92.0
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 6.6e-133 477.6 244 95.1
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 6.6e-133 477.6 250 91.6
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 6.6e-133 477.6 249 91.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.6e-133 477.2 249 93.6
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 8.6e-133 477.2 250 90.8
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.9e-132 476.1 249 93.2
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.5e-132 475.7 255 90.2
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.5e-132 475.7 255 90.6
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.3e-132 475.3 245 93.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.3e-132 475.3 249 91.6
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 3.3e-132 475.3 257 90.3
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.3e-132 474.9 249 91.6
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 5.6e-132 474.6 251 91.2
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 5.6e-132 474.6 247 91.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.3e-132 474.2 255 90.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 7.3e-132 474.2 257 89.9
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 9.5e-132 473.8 250 90.4
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.6e-131 473.0 248 91.9
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.6e-131 473.0 257 90.3
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.6e-131 473.0 250 90.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.6e-131 473.0 249 91.6
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 90.8
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.1e-131 472.6 251 91.2
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.1e-131 472.6 254 89.8
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.1e-131 472.6 251 90.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 2.1e-131 472.6 255 90.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 2.8e-131 472.2 250 89.2
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.6e-131 471.9 254 89.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 4.7e-131 471.5 244 93.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 4.7e-131 471.5 244 91.8
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 6.2e-131 471.1 251 90.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 8.1e-131 470.7 253 89.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 8.1e-131 470.7 251 91.2
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 8.1e-131 470.7 251 90.4
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-130 470.3 245 92.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 91.2
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.3e-130 469.2 252 91.3
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.8
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.8
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.1e-130 468.8 250 90.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 5.2e-130 468.0 267 86.1
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.8e-130 467.6 247 91.9
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.6e-129 465.7 251 90.0
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 2.6e-129 465.7 249 89.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 5.8e-129 464.5 245 91.0
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 9.8e-129 463.8 246 89.8
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.3e-128 463.4 247 89.9
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.7e-128 463.0 245 90.6
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.0e-125 452.2 247 87.9
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 7.3e-124 447.6 249 87.6
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.8e-122 443.0 246 87.4
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.3e-122 442.6 356 66.6
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 4.0e-122 441.8 247 85.4
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 9.9e-121 437.2 266 83.1
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.9e-120 434.9 244 86.9
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 2.4e-119 432.6 238 86.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 6.0e-118 427.9 228 92.1
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.7e-117 426.4 251 82.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.3e-117 426.0 223 91.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 3.3e-116 422.2 249 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.8e-115 419.1 240 84.2
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.2e-111 405.6 224 90.2
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 3.5e-110 402.1 244 79.1
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.6e-99 365.5 186 96.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 4.6e-94 348.6 190 90.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.0e-93 347.4 241 70.5
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.5e-89 333.6 171 94.2
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 4.9e-88 328.6 171 93.6
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 9.3e-87 324.3 181 89.0
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.3e-85 319.7 169 91.7
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 7.4e-84 314.7 165 92.1
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 3.4e-81 305.8 183 83.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.7e-77 291.6 183 77.6
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.3e-75 287.3 164 87.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-74 283.9 164 84.8
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.1e-74 282.3 164 86.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 5.9e-73 278.5 145 94.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-71 274.2 178 78.7
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.1e-69 265.4 142 90.1
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.1e-69 265.4 213 67.6
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 6.7e-69 265.0 155 85.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.1e-68 264.2 147 88.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.8e-67 259.6 155 84.5
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.4e-65 252.7 156 80.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.6e-60 236.5 148 80.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 6.1e-54 215.3 193 55.4
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 3.3e-52 209.5 141 75.9
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.4e-52 209.1 151 72.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 4.5e-41 172.6 167 58.7
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.2e-40 170.2 93 87.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.6e-32 142.1 76 92.1
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.3e-31 139.4 66 93.9
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 6.8e-29 132.1 194 45.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.4e-26 123.6 71 84.5
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.3e-24 117.9 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 6.4e-19 99.0 55 83.6
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 1.9e-18 97.4 55 81.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 8.6e-16 88.6 50 82.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 1.6e-14 84.3 46 80.4
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 3.6e-06 56.6 84 41.7


User provided reference genes

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