Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.1e-61 240.0 131 100.0
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.6e-57 226.1 131 91.6
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.9e-55 219.2 131 88.5
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.2e-54 216.5 131 87.8
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 4.7e-54 214.5 131 86.3
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 8.1e-54 213.8 131 86.3
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.1e-53 213.4 127 89.8
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.1e-53 213.4 131 87.8
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 1.4e-53 213.0 131 87.8
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.8e-53 212.6 131 85.5
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.8e-53 212.6 131 87.8
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 1.8e-53 212.6 131 85.5
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 2.3e-53 212.2 131 85.5
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.3e-53 212.2 130 87.7
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 2.3e-53 212.2 131 87.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.3e-53 212.2 131 87.0
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 3.1e-53 211.8 131 87.0
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 4.0e-53 211.5 131 85.5
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 6.8e-53 210.7 130 86.9
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 6.8e-53 210.7 131 85.5
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 6.8e-53 210.7 127 88.2
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 8.9e-53 210.3 130 85.4
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 8.9e-53 210.3 131 87.8
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 8.9e-53 210.3 131 85.5
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 8.9e-53 210.3 131 83.2
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 1.2e-52 209.9 131 85.5
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.2e-52 209.9 131 84.7
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.2e-52 209.9 127 89.0
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.0e-52 209.1 130 85.4
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 2.0e-52 209.1 131 82.4
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.0e-52 209.1 131 84.7
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 3.4e-52 208.4 130 85.4
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 4.4e-52 208.0 131 84.7
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 7.6e-52 207.2 127 86.6
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 9.9e-52 206.8 130 85.4
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 9.9e-52 206.8 130 85.4
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 9.9e-52 206.8 129 83.7
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 9.9e-52 206.8 130 85.4
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 1.3e-51 206.5 131 82.4
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 1.7e-51 206.1 131 83.2
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 2.2e-51 205.7 129 82.9
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 2.2e-51 205.7 127 84.3
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 3.7e-51 204.9 131 85.5
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.7e-51 204.9 131 81.7
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 4.9e-51 204.5 131 80.9
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 4.9e-51 204.5 130 85.4
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 4.9e-51 204.5 129 82.2
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 4.9e-51 204.5 131 82.4
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 4.9e-51 204.5 125 86.4
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 6.4e-51 204.1 130 82.3
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 6.4e-51 204.1 127 83.5
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 6.4e-51 204.1 127 85.0
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 8.4e-51 203.8 129 82.9
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 1.4e-50 203.0 131 80.2
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 1.4e-50 203.0 129 82.2
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.4e-50 203.0 129 82.2
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.9e-50 202.6 130 83.8
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 2.4e-50 202.2 129 81.4
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 3.2e-50 201.8 129 81.4
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 9.2e-50 200.3 140 79.3
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.2e-49 199.9 126 83.3
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 1.6e-49 199.5 129 79.8
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 2.1e-49 199.1 130 83.1
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 4.6e-49 198.0 130 80.0
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 4.6e-49 198.0 130 80.0
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 6.0e-49 197.6 131 79.4
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 6.0e-49 197.6 131 79.4
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 6.0e-49 197.6 131 79.4
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 6.0e-49 197.6 130 83.1
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 7.8e-49 197.2 131 80.2
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.0e-48 196.8 131 79.4
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.7e-48 196.1 144 77.1
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 2.3e-48 195.7 131 78.6
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 2.3e-48 195.7 131 78.6
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 6.6e-48 194.1 135 77.0
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 3.3e-47 191.8 131 77.9
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 9.6e-47 190.3 186 61.3
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.6e-46 189.5 129 76.7
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 4.7e-46 188.0 130 78.5
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.7e-46 188.0 129 76.0
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 6.2e-46 187.6 113 85.8
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 5.2e-45 184.5 111 83.8
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 2.0e-44 182.6 134 76.1
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 2.0e-44 182.6 113 84.1
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 3.4e-44 181.8 113 85.0
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 3.4e-44 181.8 113 84.1
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 4.4e-44 181.4 106 89.6
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 1.7e-43 179.5 124 71.8
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.2e-43 179.1 121 81.0
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 6.4e-43 177.6 104 90.4
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 6.4e-43 177.6 129 72.1
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.1e-42 176.8 107 84.1
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.4e-42 176.4 105 88.6
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 1.4e-42 176.4 111 83.8
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.9e-42 176.0 121 79.3
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 4.2e-42 174.9 111 80.2
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 5.4e-42 174.5 105 88.6
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 7.1e-42 174.1 111 80.2
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.6e-41 172.9 108 81.5
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 4.6e-41 171.4 113 79.6
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.0e-40 170.2 105 84.8
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 6.6e-40 167.5 124 75.8
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 8.7e-40 167.2 112 77.7
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.1e-39 166.8 116 75.9
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 1.9e-39 166.0 119 75.6
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 2.5e-39 165.6 124 67.7
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 4.3e-39 164.9 129 70.5
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 5.6e-39 164.5 131 71.0
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 8.1e-38 160.6 125 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 1.4e-37 159.8 131 63.4
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 1.8e-37 159.5 133 69.2
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 1.5e-36 156.4 163 55.8
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.5e-36 156.4 124 66.1
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 2.0e-36 156.0 92 87.0
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 2.6e-36 155.6 119 72.3
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 3.4e-36 155.2 87 92.0
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 4.4e-36 154.8 92 87.0
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 4.4e-36 154.8 109 72.5
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 5.8e-36 154.5 87 92.0
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 1.3e-35 153.3 92 85.9
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 4.9e-35 151.4 92 83.7
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.9e-34 149.4 84 89.3
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 7.1e-34 147.5 92 83.7
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 9.3e-34 147.1 88 84.1
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 1.2e-33 146.7 92 81.5
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 1.6e-33 146.4 88 87.5
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 1.6e-33 146.4 117 69.2
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 3.5e-33 145.2 95 77.9
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 3.5e-33 145.2 87 88.5
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.1e-32 141.4 131 64.1
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 9.6e-31 137.1 95 82.1
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.8e-29 132.9 90 76.7
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 4.0e-29 131.7 102 71.6
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 4.9e-27 124.8 71 90.1
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.4e-26 123.2 92 75.0
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 4.2e-26 121.7 92 73.9
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.6e-25 118.2 88 72.7
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 3.0e-24 115.5 202 42.1
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.1e-22 109.4 61 91.8
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 1.1e-21 107.1 63 87.3
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 3.1e-21 105.5 124 46.0
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 1.1e-18 97.1 111 54.1
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 1.1e-18 97.1 121 41.3
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.9e-18 96.3 67 70.1
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 4.2e-18 95.1 64 73.4
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.2e-17 93.6 64 71.9
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 2.7e-17 92.4 78 60.3
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.8e-16 89.7 63 69.8
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.8e-16 89.7 65 69.2
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.5e-15 86.7 68 63.2
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 5.7e-15 84.7 173 38.7
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 1.1e-13 80.5 114 36.8
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 5.0e-11 71.6 127 40.2
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 8.4e-11 70.9 123 31.7
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 8.7e-08 60.8 51 62.7


User provided reference genes

Program Settings