Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G121300 Carya illinoinensis HOM05D008821 ORTHO05D010464 1.6e-73 279.3 138 100.0
Prupe.4G083800 Prunus persica HOM05D008821 ORTHO05D010464 4.7e-28 128.3 150 46.7
TAR460G0006 Trochodendron aralioides HOM05D008821 ORTHO05D010464 1.3e-25 120.2 133 51.1
Thecc.06G147000 Theobroma cacao HOM05D008821 ORTHO05D010464 1.1e-24 117.1 134 47.8
RcHm_v2.0_Chr5g0014511 Rosa chinensis HOM05D008821 ORTHO05D010464 1.4e-24 116.7 140 46.4
Lj4g0018254 Lotus japonicus HOM05D008821 ORTHO05D010464 1.2e-23 113.6 133 48.9
MBI18_g11239_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 2.7e-23 112.5 129 48.1
Nn4g26609 Nelumbo nucifera HOM05D008821 ORTHO05D010464 7.8e-23 110.9 131 47.3
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 1.7e-22 109.8 131 45.0
PSO541G6549 Papaver somniferum HOM05D008821 ORTHO05D010464 2.9e-22 109.0 133 46.6
FvH4_3g05210 Fragaria vesca HOM05D008821 ORTHO05D010464 6.6e-22 107.8 128 48.4
Glyma.05G142600 Glycine max HOM05D008821 ORTHO05D010464 8.6e-22 107.5 114 52.6
Gohir.D06G143700 Gossypium hirsutum HOM05D008821 ORTHO05D010464 8.6e-22 107.5 136 43.4
Lj5g0007792 Lotus japonicus HOM05D008821 ORTHO05D010464 8.6e-22 107.5 133 46.6
FAN21G0539 Fragaria x ananassa HOM05D008821 ORTHO05D010464 1.1e-21 107.1 128 48.4
Gorai.010G167500 Gossypium raimondii HOM05D008821 ORTHO05D010464 1.9e-21 106.3 136 43.4
Manes.15G123932 Manihot esculenta HOM05D008821 ORTHO05D010464 2.5e-21 105.9 113 52.2
Gohir.A06G139000 Gossypium hirsutum HOM05D008821 ORTHO05D010464 3.3e-21 105.5 136 41.9
Haze_05636 Corylus avellana HOM05D008821 ORTHO05D010464 2.1e-20 102.8 139 44.6
Dinv32224 Davidia involucrata HOM05D000116 ORTHO05D000133 3.6e-20 102.1 113 49.6
Oeu007936.1 Olea europaea HOM05D008821 ORTHO05D010464 6.1e-20 101.3 133 42.9
Atru.chr10.1160 Acer truncatum HOM05D008821 ORTHO05D010464 8.0e-20 100.9 137 43.8
Glyma.08G098600 Glycine max HOM05D008821 ORTHO05D010464 8.0e-20 100.9 114 50.9
Oeu007934.1 Olea europaea HOM05D008821 ORTHO05D010464 8.0e-20 100.9 133 42.9
FAN16G1747 Fragaria x ananassa HOM05D008821 ORTHO05D010464 1.0e-19 100.5 120 50.0
FAN16G2928 Fragaria x ananassa HOM05D008821 ORTHO05D010464 1.0e-19 100.5 120 50.0
TPR.G9571 Trifolium pratense HOM05D008821 ORTHO05D010464 8.9e-19 97.4 118 49.2
Cfa000919 Carpinus fangiana HOM05D008821 ORTHO05D010464 3.4e-18 95.5 139 40.3
CSS0030437 Camellia sinensis var. sinensis HOM05D008821 ORTHO05D010464 4.4e-18 95.1 131 40.5
ClCG01G024780 Citrullus lanatus HOM05D008821 ORTHO05D010464 4.4e-18 95.1 109 52.3
MELO3C007119.2 Cucumis melo HOM05D008821 ORTHO05D010464 4.4e-18 95.1 106 53.8
CsaV3_6G051900 Cucumis sativus L. HOM05D000116 ORTHO05D010464 7.5e-18 94.4 106 52.8
Psat7g081560 Pisum sativum HOM05D008821 ORTHO05D010464 7.5e-18 94.4 133 45.9
Medtr5g077560 Medicago truncatula HOM05D008821 ORTHO05D010464 9.8e-18 94.0 113 46.0
Phvul.002G180600 Phaseolus vulgaris HOM05D008821 ORTHO05D010464 1.3e-17 93.6 131 45.0
Lalb_Chr12g0196061 Lupinus albus HOM05D008821 ORTHO05D010464 4.6e-15 85.1 136 40.4
MBI02_g21430_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 6.2e-12 74.7 87 49.4
Sc24g0001660 Simmondsia chinensis HOM05D008821 ORTHO05D010464 1.4e-11 73.6 110 43.6
Sed0011418 Sechium edule HOM05D008821 ORTHO05D010464 5.2e-11 71.6 97 46.4
arahy.Tifrunner.gnm1.ann1.SDZ0GZ Arachis hypogaea HOM05D008821 ORTHO05D010464 4.4e-10 68.6 81 49.4
arahy.Tifrunner.gnm1.ann1.ZX7BQ2 Arachis hypogaea HOM05D000116 ORTHO05D010464 5.8e-10 68.2 81 49.4
SGA_v2.0_scaffold40G15657 Striga asiatica HOM05D000624 ORTHO05D000495 3.7e-09 65.5 120 36.7
Thhalv10027014m.g Eutrema salsugineum HOM05D010864 ORTHO05D010464 8.3e-09 64.3 115 38.3
AL7G35960 Arabidopsis lyrata HOM05D010864 ORTHO05D010464 1.1e-08 63.9 115 37.4
BcaB04g18472 Brassica carinata HOM05D010864 ORTHO05D010464 1.4e-08 63.5 112 39.3
CARHR225210 Cardamine hirsuta HOM05D010864 ORTHO05D010464 4.1e-08 62.0 116 36.2
AT4G18395 Arabidopsis thaliana HOM05D010864 ORTHO05D010464 5.4e-08 61.6 117 35.9
C03p81130 Brassica napus HOM05D010864 ORTHO05D010464 5.4e-08 61.6 112 38.4
ATR1098G131 Amborella trichopoda HOM05D008821 ORTHO05D010464 7.1e-08 61.2 93 43.0
BolC3t20381H Brassica oleracea HOM05D010864 ORTHO05D010464 9.2e-08 60.8 112 38.4
Carub.0007s2287 Capsella rubella HOM05D010864 ORTHO05D010464 1.2e-07 60.5 115 36.5
A08p13730 Brassica napus HOM05D010864 ORTHO05D010464 2.1e-07 59.7 112 38.4
BraA08t33355Z Brassica rapa HOM05D010864 ORTHO05D010464 2.1e-07 59.7 112 38.4
BcaC01g00536 Brassica carinata HOM05D010864 ORTHO05D010464 3.5e-07 58.9 78 46.2
Sp7g15640 Schrenkiella parvula HOM05D010864 ORTHO05D010464 4.6e-07 58.5 115 34.8
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 6.0e-07 58.2 88 42.0
Aa31LG6G1120 Aethionema arabicum HOM05D010864 ORTHO05D010464 3.9e-06 55.5 131 30.5


User provided reference genes

Program Settings