Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 8.3e-302 1039.6 552 100.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.2e-239 833.2 559 80.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.2e-221 771.9 694 63.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.8e-196 689.1 558 66.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 4.0e-195 685.3 554 66.1
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.2e-194 683.7 551 66.8
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 5.8e-194 681.4 554 64.8
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.2e-193 679.5 551 65.7
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.2e-193 679.5 550 65.5
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 4.6e-191 671.8 561 64.2
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 7.3e-189 664.5 546 64.7
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.1e-188 662.9 554 64.8
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 3.6e-188 662.1 549 64.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 5.8e-186 654.8 554 63.4
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.9e-185 652.5 555 64.0
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-184 650.6 556 62.6
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.3e-182 643.7 575 64.3
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.1e-182 641.7 557 61.0
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.5e-181 640.2 564 63.5
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.6e-181 638.3 558 62.0
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 9.5e-181 637.5 551 62.1
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.8e-180 636.0 561 61.3
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.5e-178 630.2 557 59.2
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.5e-178 630.2 553 61.3
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.6e-178 629.4 549 62.1
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.8e-178 628.2 550 61.3
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.2e-177 626.3 552 61.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 2.2e-177 626.3 558 59.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.4e-177 624.4 552 61.2
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.1e-176 622.1 552 60.9
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.2e-175 620.5 562 60.3
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.6e-175 620.2 543 61.0
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 7.8e-175 617.8 558 59.9
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 7.8e-175 617.8 546 61.9
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 6.6e-174 614.8 558 58.2
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 2.5e-173 612.8 556 59.2
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.3e-173 612.5 559 59.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.6e-173 611.7 538 60.6
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.8e-172 609.4 558 60.2
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 3.1e-171 605.9 558 58.8
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 5.2e-171 605.1 558 58.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 4.4e-170 602.1 564 58.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.1e-168 597.4 548 60.0
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.3e-166 590.5 561 57.9
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.6e-164 583.6 521 62.8
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 2.1e-164 583.2 546 59.2
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 3.6e-164 582.4 560 57.5
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 5.3e-163 578.6 560 56.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 2.9e-161 572.8 464 64.7
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.1e-160 570.9 561 56.7
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.4e-160 570.5 557 56.7
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.2e-159 567.4 556 55.6
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.6e-159 567.0 560 56.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.0e-158 562.8 560 55.9
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.5e-157 560.5 551 56.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.6e-156 557.0 547 57.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 2.8e-156 556.2 545 55.4
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.8e-155 553.5 555 54.8
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.4e-155 553.1 557 56.6
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.3e-153 547.4 547 56.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.2e-152 542.7 450 63.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 4.2e-152 542.3 596 52.0
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.7e-151 539.7 547 56.3
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 5.1e-150 535.4 552 56.0
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 6.7e-150 535.0 551 53.9
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 6.7e-150 535.0 547 56.5
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.7e-150 535.0 557 54.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 2.5e-149 533.1 546 54.6
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 2.1e-148 530.0 546 54.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.1e-148 530.0 546 53.5
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.4e-147 527.3 547 53.7
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.8e-146 521.9 558 53.0
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 5.8e-146 521.9 547 52.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 7.6e-146 521.5 550 52.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.4e-144 517.3 545 52.1
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.9e-144 516.9 546 52.0
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 3.2e-144 516.2 546 53.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 4.2e-144 515.8 546 53.3
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 5.5e-144 515.4 545 52.7
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 7.1e-144 515.0 546 52.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.6e-143 513.8 545 52.5
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 7.9e-143 511.5 550 51.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.8e-142 510.4 556 52.9
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 5.1e-142 508.8 386 66.1
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.1e-141 507.7 529 53.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 7.4e-141 505.0 546 52.4
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.6e-138 495.0 478 56.1
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.0e-137 494.6 553 50.6
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.8e-137 492.7 482 54.8
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.6e-132 477.2 547 49.4
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 5.9e-130 468.8 353 67.1
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 4.6e-127 459.1 464 54.3
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.8e-126 457.2 472 54.2
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 4.2e-120 436.0 397 62.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 2.7e-119 433.3 561 47.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 4.4e-117 426.0 497 48.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.5e-113 412.1 566 44.9
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.7e-108 397.5 270 82.2
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.4e-107 393.7 325 64.0
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.7e-103 380.2 343 59.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.0e-93 347.4 393 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 5.4e-91 339.3 507 41.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.2e-90 338.2 386 47.7
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.0e-86 325.1 281 63.0
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 4.0e-86 323.2 563 37.1
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 8.9e-86 322.0 576 37.3
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 8.6e-81 305.4 218 69.7
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.6e-79 301.2 400 45.0
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.9e-76 290.4 321 51.7
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 5.0e-73 279.6 433 40.9
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.9e-72 277.7 432 39.6
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 8.9e-70 268.9 277 56.0
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.2e-68 264.2 277 53.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.2e-66 258.5 261 54.0
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.7e-63 246.5 165 72.1
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 2.3e-62 244.2 356 43.0
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 7.6e-61 239.2 413 36.3
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.4e-59 234.2 160 73.1
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.6e-57 226.1 292 49.7
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.3e-51 205.7 196 54.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 3.5e-50 203.8 155 68.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.1e-41 173.3 158 58.2
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-40 172.2 159 58.5
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 2.8e-39 167.5 185 49.2
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 7.6e-37 159.5 119 67.2
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.2e-36 157.9 238 44.1
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.7e-31 140.6 136 56.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.1e-30 137.5 196 52.6
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.0e-30 137.1 209 51.2
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 5.0e-20 103.6 114 49.1
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 6.7e-17 93.2 117 50.4
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.5e-13 80.5 91 52.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.5e-13 80.5 91 52.7
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 3.8e-12 77.4 195 33.3
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.6e-10 72.0 81 48.1
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 1.6e-10 72.0 94 47.9
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 8.8e-09 66.2 390 24.4


User provided reference genes

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