Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.3e-166 589.7 315 100.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 4.7e-108 395.2 292 73.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 6.1e-108 394.8 293 72.7
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 8.9e-99 364.4 316 63.3
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 3.4e-98 362.5 308 64.0
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.1e-93 347.4 325 61.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 3.3e-93 345.9 309 63.4
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.8e-91 340.1 318 61.0
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 5.8e-90 335.1 317 60.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.9e-88 330.1 311 60.8
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.4e-88 329.7 298 63.1
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 7.1e-88 328.2 312 63.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 9.2e-88 327.8 312 60.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 2.7e-87 326.2 324 61.1
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.0e-87 325.1 312 62.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 7.8e-87 324.7 309 59.2
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.0e-86 324.3 295 60.3
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.7e-86 323.6 304 63.2
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 5.1e-86 322.0 293 61.1
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 8.6e-86 321.2 304 62.5
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.7e-84 315.5 304 62.2
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.4e-83 313.2 294 62.6
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.8e-81 305.8 320 56.2
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 4.9e-81 305.4 314 57.6
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.9e-80 303.5 292 60.3
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.2e-79 300.8 300 59.3
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-77 293.9 320 55.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.5e-77 293.9 294 55.1
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.5e-77 293.1 325 53.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 3.3e-77 292.7 296 55.4
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 5.6e-77 292.0 296 55.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.2e-76 290.8 323 56.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.6e-76 289.3 321 53.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.6e-76 289.3 323 53.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 4.7e-76 288.9 306 55.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.4e-75 287.3 329 52.9
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.2e-75 285.4 319 54.9
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 5.2e-75 285.4 322 52.5
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 9.0e-75 284.6 307 53.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.7e-73 280.4 281 57.7
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.2e-73 280.0 296 53.4
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 6.4e-73 278.5 295 53.6
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.4e-72 277.3 293 51.5
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 5.4e-72 275.4 294 53.1
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 5.4e-72 275.4 324 54.3
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 7.1e-72 275.0 300 53.7
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.6e-71 273.9 298 53.4
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.6e-71 272.3 322 51.2
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 7.8e-71 271.6 319 51.4
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 7.8e-71 271.6 292 53.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 3.0e-70 269.6 299 51.5
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 3.9e-70 269.2 324 54.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 3.9e-70 269.2 294 50.7
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 8.7e-70 268.1 305 52.5
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.5e-69 267.3 309 53.7
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.5e-69 267.3 320 50.6
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.5e-69 267.3 320 50.6
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.9e-69 266.9 309 51.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 4.3e-69 265.8 309 51.1
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.6e-68 263.8 330 50.6
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.6e-68 263.8 320 50.6
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 2.1e-68 263.5 297 54.2
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.8e-67 260.4 300 51.0
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.1e-67 259.6 294 51.4
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 4.0e-67 259.2 298 53.7
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 4.0e-67 259.2 253 58.1
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 6.9e-67 258.5 310 51.0
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 6.9e-67 258.5 305 50.2
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 9.0e-67 258.1 310 50.6
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.6e-66 256.5 299 53.5
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 5.8e-66 255.4 336 49.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 9.9e-66 254.6 301 50.8
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 1.3e-65 254.2 299 49.2
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.8e-65 252.7 335 46.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.8e-65 252.7 335 46.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.9e-64 250.4 305 50.5
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.4e-64 250.0 309 49.5
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.4e-64 250.0 323 46.4
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.2e-64 249.6 308 49.4
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.2e-64 249.6 323 46.4
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.4e-64 248.8 291 49.1
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 7.1e-64 248.4 309 49.5
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 9.3e-64 248.1 300 48.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.6e-63 247.3 306 51.0
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.6e-63 247.3 315 50.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 2.1e-63 246.9 310 50.0
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.5e-63 246.1 298 49.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.3e-62 243.4 306 50.7
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 5.6e-61 238.8 304 50.3
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 5.6e-61 238.8 304 50.3
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 5.6e-61 238.8 284 49.3
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 9.6e-61 238.0 317 48.6
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-60 237.7 295 49.2
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 2.1e-60 236.9 299 48.8
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.7e-60 236.1 301 49.5
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 4.8e-60 235.7 299 49.8
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 4.8e-60 235.7 299 47.2
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 8.1e-60 235.0 306 49.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-59 234.6 316 49.1
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.1e-59 233.0 288 48.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 2.6e-58 229.9 304 49.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 5.8e-58 228.8 318 46.2
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 3.8e-57 226.1 301 45.8
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 4.9e-57 225.7 298 45.0
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 3.5e-55 219.5 292 47.9
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 6.7e-54 215.3 249 52.6
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.9e-53 213.8 295 44.1
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.5e-53 213.4 199 62.3
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 7.4e-53 211.8 326 44.5
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.7e-52 209.5 282 45.0
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.8e-51 207.2 292 45.5
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 3.1e-51 206.5 296 44.3
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 6.9e-51 205.3 297 44.4
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.0e-50 203.8 297 44.1
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 7.6e-50 201.8 300 43.3
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.9e-48 197.2 253 49.0
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 7.1e-48 195.3 297 43.8
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-45 188.0 273 43.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-45 188.0 273 42.9
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 8.2e-36 155.2 225 46.2
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 1.3e-33 147.9 157 56.1
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.5e-29 134.4 284 35.2
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.2e-28 130.6 142 51.4
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 3.6e-23 113.2 172 41.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 7.4e-21 105.5 116 52.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 5.5e-16 89.4 210 35.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 8.0e-15 85.5 120 45.0
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.3e-11 72.8 174 35.1
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 9.4e-08 62.0 84 44.0


User provided reference genes

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