Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.2e-50 201.4 101 100.0
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.2e-50 201.4 101 100.0
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.0e-11 73.6 68 57.4
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.9e-11 72.0 55 72.7
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 5.0e-11 71.2 65 63.1
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 8.5e-11 70.5 47 74.5
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.5e-10 69.7 47 78.7
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 3.2e-10 68.6 70 54.3
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 5.5e-10 67.8 68 55.9
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 5.5e-10 67.8 63 55.6
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 9.4e-10 67.0 47 74.5
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 9.4e-10 67.0 47 74.5
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.2e-09 66.6 77 50.6
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 2.7e-09 65.5 63 57.1
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 3.6e-09 65.1 63 58.7
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.6e-09 65.1 46 69.6
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 6.1e-09 64.3 43 74.4
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 6.1e-09 64.3 50 72.0
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 8.0e-09 63.9 47 68.1
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 8.0e-09 63.9 54 63.0
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 8.0e-09 63.9 72 59.7
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.0e-08 63.5 68 52.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.8e-08 62.8 47 72.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.3e-08 62.4 47 66.0
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.3e-08 62.4 47 66.0
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 2.3e-08 62.4 60 61.7
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 3.0e-08 62.0 70 55.7
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 3.0e-08 62.0 65 56.9
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 3.0e-08 62.0 63 54.0
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.0e-08 62.0 55 61.8
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.0e-08 62.0 63 54.0
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.0e-08 62.0 55 61.8
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 3.0e-08 62.0 43 76.7
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 4.0e-08 61.6 70 55.7
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 5.2e-08 61.2 43 72.1
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 6.7e-08 60.8 65 56.9
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 6.7e-08 60.8 65 56.9
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 6.7e-08 60.8 65 56.9
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.1e-07 60.1 55 60.0
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.6e-07 58.9 71 50.7
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.6e-07 58.9 68 55.9
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 4.4e-07 58.2 66 48.5
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 5.7e-07 57.8 47 61.7
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 5.7e-07 57.8 73 50.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 9.7e-07 57.0 47 61.7
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 9.7e-07 57.0 47 61.7
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 9.7e-07 57.0 45 64.4
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.3e-06 56.6 62 54.8
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 2.2e-06 55.8 69 49.3
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.2e-06 55.8 43 67.4
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.7e-06 55.1 53 58.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 4.8e-06 54.7 61 50.8
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 6.3e-06 54.3 79 43.0
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 6.3e-06 54.3 79 43.0


User provided reference genes

Program Settings