Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 2.4e-116 422.2 214 100.0
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 2.0e-57 226.5 181 67.4
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 1.4e-50 203.8 190 61.1
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 7.5e-49 198.0 186 62.9
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.0e-41 173.3 184 55.4
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.0e-41 173.3 184 55.4
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 1.4e-39 167.2 185 51.9
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 2.4e-39 166.4 185 51.9
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 9.2e-39 164.5 182 57.7
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 1.6e-38 163.7 183 53.6
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 1.1e-36 157.5 186 50.5
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 2.5e-36 156.4 144 58.3
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 9.5e-36 154.5 181 49.7
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 9.5e-36 154.5 181 52.5
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 1.2e-35 154.1 182 51.1
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 3.6e-35 152.5 191 53.4
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 3.6e-35 152.5 142 59.2
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 1.0e-34 151.0 183 53.0
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 1.8e-34 150.2 183 54.6
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 3.4e-33 146.0 155 54.2
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 7.5e-33 144.8 181 50.8
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 6.4e-32 141.7 182 50.0
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 1.9e-31 140.2 95 69.5
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 2.4e-31 139.8 95 70.5
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 2.4e-31 139.8 166 51.2
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 3.2e-31 139.4 95 69.5
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 4.1e-31 139.0 181 47.5
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 5.4e-31 138.7 142 52.8
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 7.0e-31 138.3 183 47.0
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 9.2e-31 137.9 166 50.0
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.6e-30 137.1 156 50.0
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 1.6e-30 137.1 93 69.9
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.0e-30 136.7 95 72.6
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 2.0e-30 136.7 185 49.7
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 2.7e-30 136.3 186 46.8
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.7e-30 136.3 185 49.7
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 3.5e-30 136.0 181 47.0
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 1.0e-29 134.4 149 52.3
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 1.3e-29 134.0 188 47.3
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 1.7e-29 133.7 166 47.6
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 3.0e-29 132.9 87 75.9
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 3.9e-29 132.5 162 48.1
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 3.9e-29 132.5 112 62.5
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.1e-28 131.0 184 47.8
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 1.5e-28 130.6 188 48.4
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 1.9e-28 130.2 162 51.2
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 2.5e-28 129.8 186 47.8
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 3.3e-28 129.4 112 61.6
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 5.6e-28 128.6 182 44.5
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 5.6e-28 128.6 112 60.7
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 1.6e-27 127.1 190 48.4
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 2.1e-27 126.7 187 47.1
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 2.8e-27 126.3 183 43.7
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 3.6e-27 125.9 85 69.4
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 3.6e-27 125.9 183 43.7
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 1.4e-26 124.0 194 42.3
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 1.8e-26 123.6 182 45.6
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 2.3e-26 123.2 177 48.0
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 4.0e-26 122.5 104 58.7
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 5.2e-26 122.1 170 48.2
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 5.2e-26 122.1 91 69.2
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 8.9e-26 121.3 183 44.8
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 2.0e-25 120.2 156 46.2
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 2.0e-25 120.2 182 45.1
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 3.4e-25 119.4 94 63.8
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 4.4e-25 119.0 97 64.9
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 5.8e-25 118.6 78 73.1
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 5.8e-25 118.6 94 61.7
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 5.8e-25 118.6 164 44.5
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 5.8e-25 118.6 83 67.5
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 9.8e-25 117.9 182 44.5
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 1.3e-24 117.5 97 66.0
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 2.9e-24 116.3 94 62.8
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 2.9e-24 116.3 158 48.7
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 4.9e-24 115.5 72 76.4
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 8.3e-24 114.8 88 63.6
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 1.9e-23 113.6 188 42.0
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 4.1e-23 112.5 80 73.8
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 5.4e-23 112.1 84 65.5
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 7.1e-23 111.7 85 68.2
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 7.1e-23 111.7 180 41.7
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 9.2e-23 111.3 94 60.6
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 1.6e-22 110.5 83 68.7
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 1.6e-22 110.5 83 68.7
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 2.1e-22 110.2 69 76.8
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 2.7e-22 109.8 145 47.6
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 2.7e-22 109.8 156 43.6
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 3.5e-22 109.4 83 62.7
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 3.0e-21 106.3 139 43.2
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 3.9e-21 105.9 88 60.2
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 8.6e-21 104.8 91 57.1
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 6.2e-19 98.6 70 67.1
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 8.1e-19 98.2 60 75.0
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 1.4e-18 97.4 82 56.1
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 1.8e-18 97.1 82 54.9
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 2.3e-18 96.7 72 68.1
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 3.4e-17 92.8 61 70.5
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 2.2e-16 90.1 82 53.7
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 7.1e-15 85.1 62 56.5
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-14 82.8 66 57.6
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 4.6e-14 82.4 53 67.9
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 5.1e-13 79.0 70 55.7
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 8.6e-13 78.2 92 46.7
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 4.7e-11 72.4 91 48.4
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 4.7e-11 72.4 43 76.7
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 1.4e-10 70.9 63 55.6


User provided reference genes

Program Settings