Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.0e-301 1037.7 530 100.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.6e-255 883.2 530 81.5
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.9e-250 869.0 518 83.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.3e-248 862.1 529 80.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.6e-246 854.7 526 78.9
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 6.2e-246 854.0 517 83.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 8.1e-246 853.6 522 80.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.4e-244 848.2 524 79.6
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 5.5e-242 840.9 524 79.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 4.6e-241 837.8 524 78.4
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.6e-241 837.8 532 78.9
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-239 833.2 524 77.9
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 3.3e-239 831.6 523 78.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-239 831.2 524 78.1
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 9.0e-237 823.5 527 77.8
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-235 819.7 524 75.8
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 8.4e-235 817.0 527 77.8
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.4e-234 816.2 531 76.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.9e-234 815.8 533 75.4
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 5.5e-234 814.3 524 77.9
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.6e-233 812.8 519 76.7
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.0e-232 810.1 528 77.5
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.3e-232 809.7 528 76.5
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.5e-231 805.4 525 75.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.8e-229 799.3 527 75.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-228 795.8 524 73.7
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.2e-227 792.3 524 73.3
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 6.5e-227 790.8 519 76.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.9e-226 789.3 533 73.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.9e-225 783.9 528 74.2
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 7.9e-225 783.9 526 73.2
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.0e-224 783.5 525 73.3
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-224 782.7 522 73.9
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.0e-224 781.9 517 73.5
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 3.3e-223 778.5 529 74.3
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.7e-223 777.7 522 73.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.3e-222 776.5 523 73.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.8e-222 774.6 520 75.0
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 3.1e-221 771.9 516 74.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.2e-220 770.0 522 73.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.5e-220 769.6 534 72.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.0e-219 766.9 503 76.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.8e-219 765.0 514 74.3
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 3.8e-219 765.0 535 72.9
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-218 763.5 524 71.8
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.4e-218 763.1 528 72.9
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.9e-218 762.7 526 73.4
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-217 759.6 523 72.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.6e-217 759.6 527 72.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-217 759.6 523 72.8
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.6e-217 759.6 523 72.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-217 758.8 527 72.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.7e-217 758.8 528 71.4
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.6e-217 758.4 523 72.8
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 4.6e-217 758.1 527 72.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 7.9e-217 757.3 516 72.3
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.0e-216 756.9 525 73.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-216 756.9 527 71.9
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.0e-216 755.4 524 70.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.1e-216 754.6 525 72.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 6.7e-216 754.2 525 72.0
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 6.7e-216 754.2 525 72.0
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.1e-215 753.4 461 79.8
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-215 753.1 524 71.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.5e-215 753.1 524 72.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-215 752.3 525 70.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.3e-215 751.9 523 70.9
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 4.3e-215 751.5 522 72.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 5.7e-215 751.1 523 72.1
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 5.7e-215 751.1 524 72.3
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 9.7e-215 750.4 519 72.6
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.3e-214 750.0 525 72.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.2e-214 749.2 524 71.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.8e-213 746.1 519 72.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.4e-213 745.7 510 71.4
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.1e-213 745.3 464 78.9
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 9.1e-213 743.8 527 72.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.5e-212 743.0 524 70.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 5.9e-212 741.1 514 70.6
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.2e-210 735.3 504 74.2
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.2e-210 735.3 501 71.9
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 5.5e-210 734.6 516 71.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.2e-209 733.4 519 68.8
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.1e-209 732.6 521 71.8
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.6e-209 731.9 479 75.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.6e-209 731.9 482 76.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.0e-208 728.8 534 68.7
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.9e-208 728.4 521 68.3
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 5.2e-208 728.0 530 68.3
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 5.2e-208 728.0 527 69.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 8.8e-208 727.2 520 70.0
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.1e-207 726.9 523 69.4
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.5e-207 726.5 482 75.5
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.5e-207 726.5 522 68.8
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.8e-206 722.2 517 68.9
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 6.3e-206 721.1 521 67.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 8.2e-206 720.7 517 68.9
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.8e-205 719.5 529 67.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-205 719.2 520 68.8
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.3e-205 718.0 520 68.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-204 716.8 517 68.9
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.0e-203 713.8 521 68.5
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.9e-202 709.5 514 67.9
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.1e-201 706.1 528 68.8
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.1e-201 706.1 434 80.0
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 9.4e-194 680.6 460 71.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 9.1e-189 664.1 457 72.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.5e-187 657.9 533 61.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 2.6e-183 646.0 528 60.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.4e-181 640.2 457 68.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.4e-181 640.2 516 61.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.3e-179 632.9 426 72.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.2e-177 627.1 529 59.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.3e-176 622.9 489 62.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 8.3e-174 614.4 520 60.8
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.6e-171 604.7 393 76.3
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.5e-170 602.8 385 77.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.0e-168 595.5 387 76.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 9.8e-167 590.9 460 63.5
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 4.1e-165 585.5 517 60.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 7.5e-159 564.7 391 69.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.0e-155 554.3 382 69.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.9e-150 536.2 361 74.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.4e-136 490.0 342 70.2
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.4e-133 479.9 322 72.7
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.0e-131 473.0 473 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 9.6e-130 468.0 528 47.0
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.4e-126 454.9 321 68.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.2e-121 438.7 456 48.5
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.9e-114 417.2 508 42.9
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.7e-103 378.6 545 37.2
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.8e-97 359.4 224 80.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.4e-91 341.3 251 70.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.0e-75 288.5 194 71.6
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-69 268.5 186 73.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 8.3e-65 252.3 183 71.0
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-56 224.6 153 73.2
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.6e-55 221.5 171 64.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.6e-55 219.9 153 72.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.3e-54 217.6 142 73.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.0e-51 206.8 159 64.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.3e-46 191.0 140 69.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.4e-42 176.8 97 90.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-41 174.5 143 64.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.8e-28 131.0 150 48.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.8e-26 123.2 107 59.8
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 3.8e-25 120.6 74 79.7
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.8e-20 104.4 531 22.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.0e-18 98.2 71 67.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.1e-16 92.4 466 21.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.3e-12 79.0 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.3e-12 79.0 67 55.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.4e-08 64.7 49 61.2
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.4e-08 64.7 69 47.8
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 2.4e-08 64.7 50 60.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 4.2e-08 63.9 51 60.8


User provided reference genes

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