Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G103300 Carya illinoinensis HOM05D000007 ORTHO05D000017 9.2e-52 206.5 94 100.0
CiPaw.09G103200 Carya illinoinensis HOM05D000007 ORTHO05D000017 4.5e-38 161.0 83 85.5
CiPaw.10G078600 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.6e-27 125.9 83 67.5
FAN25G3412 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.2e-24 114.0 90 55.6
QL05p069347 Quercus lobata HOM05D000007 ORTHO05D000017 6.2e-24 114.0 83 61.4
FvH4_3g00900 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-23 113.2 83 59.0
FAN21G2540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-23 112.8 83 59.0
RcHm_v2.0_Chr5g0001381 Rosa chinensis HOM05D000007 ORTHO05D000017 4.0e-23 111.3 83 57.8
Cfa000091 Carpinus fangiana HOM05D000007 ORTHO05D000017 2.0e-22 109.0 83 60.2
Haze_06950 Corylus avellana HOM05D000007 ORTHO05D000017 2.0e-22 109.0 83 61.4
MD05G1358500 Malus domestica HOM05D000007 ORTHO05D000017 7.6e-22 107.1 83 56.6
Prupe.4G009600 Prunus persica HOM05D000007 ORTHO05D000017 1.0e-21 106.7 83 57.8
arahy.Tifrunner.gnm1.ann1.F3ZHRM Arachis hypogaea HOM05D000007 ORTHO05D000017 1.7e-21 105.9 83 56.6
arahy.Tifrunner.gnm1.ann1.DDZ1HR Arachis hypogaea HOM05D000007 ORTHO05D000017 2.2e-21 105.5 83 56.6
MD10G1332600 Malus domestica HOM05D000007 ORTHO05D000017 3.2e-20 101.7 83 53.0
Lj4g0008928 Lotus japonicus HOM05D000007 ORTHO05D000017 7.1e-20 100.5 88 52.3
Lj6g0017026 Lotus japonicus HOM05D000007 ORTHO05D000017 9.3e-20 100.1 80 56.2
Sabra06G0009400 Salix brachista HOM05D000007 ORTHO05D000017 2.1e-19 99.0 78 51.3
Atru.chr1.2429 Acer truncatum HOM05D000007 ORTHO05D000017 2.7e-19 98.6 78 52.6
Ca_00728_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 2.7e-19 98.6 80 55.0
Glyma.15G115100 Glycine max HOM05D000007 ORTHO05D000017 2.7e-19 98.6 79 57.0
Potri.006G013000 Populus trichocarpa HOM05D000007 ORTHO05D000017 3.5e-19 98.2 78 52.6
Psat1g175680 Pisum sativum HOM05D000007 ORTHO05D000017 6.0e-19 97.4 80 52.5
CANSAT56G1762 Cannabis sativa HOM05D000007 ORTHO05D000017 7.9e-19 97.1 82 52.4
MELO3C021691.2 Cucumis melo HOM05D000007 ORTHO05D000017 1.0e-18 96.7 80 58.8
Haze_06942 Corylus avellana HOM05D000007 ORTHO05D000017 1.3e-18 96.3 83 54.2
CsaV3_1G017240 Cucumis sativus L. HOM05D000007 ORTHO05D000017 1.3e-18 96.3 80 60.0
Glyma.07G265800 Glycine max HOM05D000007 ORTHO05D000017 6.7e-18 94.0 81 56.8
Glyma.09G010600 Glycine max HOM05D000007 ORTHO05D000017 6.7e-18 94.0 78 56.4
TPR.G30455 Trifolium pratense HOM05D000007 ORTHO05D000017 6.7e-18 94.0 83 49.4
Medtr4g133170 Medicago truncatula HOM05D000007 ORTHO05D000017 1.5e-17 92.8 87 48.3
VMungo1215G0255 Vigna mungo HOM05D000007 ORTHO05D000017 3.3e-17 91.7 83 49.4
Ca_21036_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 5.7e-17 90.9 95 44.2
ClCG01G010140 Citrullus lanatus HOM05D000007 ORTHO05D000017 5.7e-17 90.9 80 56.2
Psat4g004720 Pisum sativum HOM05D000007 ORTHO05D000017 5.7e-17 90.9 87 48.3
Phvul.003G084100 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 7.4e-17 90.5 83 49.4
TPR.G36982 Trifolium pratense HOM05D000007 ORTHO05D000017 9.7e-17 90.1 87 47.1
Medtr2g026010 Medicago truncatula HOM05D000007 ORTHO05D000017 1.3e-16 89.7 79 48.1
Glyma.17G008200 Glycine max HOM05D000007 ORTHO05D000017 1.6e-16 89.4 81 54.3
Sed0024435 Sechium edule HOM05D000007 ORTHO05D000017 2.8e-16 88.6 81 50.6
Lalb_Chr18g0057011 Lupinus albus HOM05D000007 ORTHO05D000017 1.2e-14 83.2 72 55.6
Psat7g188680 Pisum sativum HOM05D000007 ORTHO05D000017 1.2e-14 83.2 72 48.6
Lalb_Chr20g0119291 Lupinus albus HOM05D000007 ORTHO05D000017 2.0e-14 82.4 77 51.9
Manes.09G077457 Manihot esculenta HOM05D000007 ORTHO05D000017 2.0e-14 82.4 72 50.0
Thecc.06G234200 Theobroma cacao HOM05D000007 ORTHO05D000017 5.9e-14 80.9 77 48.1
Duzib160G0463 Durio zibethinus HOM05D000007 ORTHO05D000017 2.2e-13 79.0 77 48.1
Eucgr.E03976 Eucalyptus grandis HOM05D000007 ORTHO05D000017 2.9e-13 78.6 77 44.2
VMungo0251G3437 Vigna mungo HOM05D000007 ORTHO05D000017 5.0e-13 77.8 51 56.9
VMungo1080G0340 Vigna mungo HOM05D000007 ORTHO05D000017 1.1e-12 76.6 51 56.9
COL.COLO4_31895 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.9e-12 75.9 77 46.8
Duzib192G0105 Durio zibethinus HOM05D000007 ORTHO05D000017 5.5e-12 74.3 77 46.8
Potri.016G012601 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.1e-11 72.4 88 38.6
Potri.010G154601 Populus trichocarpa HOM05D000007 ORTHO05D000017 4.6e-11 71.2 88 38.6
Gohir.D06G160200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 1.0e-10 70.1 77 44.2
Gorai.010G186900 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.0e-10 70.1 77 44.2
Manes.01G095600 Manihot esculenta HOM05D000007 ORTHO05D000017 1.0e-10 70.1 86 39.5
VMungo1127G0265 Vigna mungo HOM05D000007 ORTHO05D000017 1.4e-10 69.7 51 52.9
Dinv11914 Davidia involucrata HOM05D000007 ORTHO05D000017 1.8e-10 69.3 83 42.2
Dinv30807 Davidia involucrata HOM05D000007 ORTHO05D000017 5.1e-10 67.8 80 43.8
Medtr2g028110 Medicago truncatula HOM05D000007 ORTHO05D000017 5.1e-10 67.8 92 39.1
Dinv43784 Davidia involucrata HOM05D001290 ORTHO05D001180 6.7e-10 67.4 83 42.2
Actinidia16812 Actinidia chinensis HOM05D000007 ORTHO05D000017 1.1e-09 66.6 92 40.2
TWI38G0022 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 1.1e-09 66.6 77 37.7
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.5e-09 65.5 83 33.7
Medtr8g099460 Medicago truncatula HOM05D000007 ORTHO05D000017 2.5e-09 65.5 95 38.9
AUR62016933 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.3e-09 65.1 92 34.8
Medtr2g022170 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-09 65.1 55 50.9
Medtr2g031680 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-09 65.1 83 38.6
Medtr2g031720 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-09 65.1 87 39.1
Hma1.2p1_0127F.1_g059580 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 4.3e-09 64.7 83 37.3
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 5.7e-09 64.3 85 37.6
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.7e-08 62.8 75 37.3
CSS0050410 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.7e-08 62.8 75 37.3
Medtr0667s0010 Medicago truncatula HOM05D000007 ORTHO05D000017 1.7e-08 62.8 93 35.5
Medtr2g024110 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-08 62.4 71 43.7
Medtr2g031700 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-08 62.4 83 38.6
QL05p031430 Quercus lobata HOM05D000007 ORTHO05D000017 2.2e-08 62.4 81 39.5
vmacro00292 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.2e-08 62.4 75 37.3
vmacro00299 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.2e-08 62.4 75 37.3
Haze_06947 Corylus avellana HOM05D000007 ORTHO05D000017 2.8e-08 62.0 84 36.9
VMungo0540G0504 Vigna mungo HOM05D002821 ORTHO05D003072 3.7e-08 61.6 40 60.0
Gohir.A06G153400 Gossypium hirsutum HOM05D000007 ORTHO05D000017 4.8e-08 61.2 72 40.3
Medtr1g068860 Medicago truncatula HOM05D000007 ORTHO05D000017 4.8e-08 61.2 86 37.2
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 6.3e-08 60.8 83 33.7
AUR62014756 Chenopodium quinoa HOM05D000007 ORTHO05D000017 6.3e-08 60.8 93 34.4
Haze_06940 Corylus avellana HOM05D000007 ORTHO05D000017 6.3e-08 60.8 72 36.1
Haze_06948 Corylus avellana HOM05D000007 ORTHO05D000017 6.3e-08 60.8 84 36.9
Medtr2g031640 Medicago truncatula HOM05D000007 ORTHO05D000017 6.3e-08 60.8 80 40.0
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 8.2e-08 60.5 90 33.3
CSS0024527 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 8.2e-08 60.5 90 33.3
CANSAT56G0084 Cannabis sativa HOM05D000007 ORTHO05D000017 8.2e-08 60.5 84 34.5
CAN.G567.54 Capsicum annuum HOM05D000007 ORTHO05D000017 8.2e-08 60.5 84 35.7
AUR62012551 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.2e-08 60.5 83 32.5
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 1.4e-07 59.7 83 34.9
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 1.4e-07 59.7 83 34.9
Haze_13145 Corylus avellana HOM05D000007 ORTHO05D000017 1.4e-07 59.7 68 39.7
Medtr4g006270 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-07 59.7 77 40.3
Cpa.g.sc75.108 Carica papaya HOM05D000007 ORTHO05D000017 2.4e-07 58.9 83 36.1
vmacro03637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.4e-07 58.9 83 36.1
Nitab4.5_0000271g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.1e-07 58.5 78 37.2
CAN.G567.50 Capsicum annuum HOM05D000007 ORTHO05D000017 4.1e-07 58.2 81 37.0
PGSC0003DMG401021060 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.1e-07 58.2 79 39.2
QL04p065217 Quercus lobata HOM05D000007 ORTHO05D000017 5.3e-07 57.8 82 36.6
Medtr1g068905 Medicago truncatula HOM05D000007 ORTHO05D000017 9.1e-07 57.0 89 34.8
Ciclev10033888m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.5e-06 56.2 83 32.5
Rhsim11G0019900 Rhododendron simsii HOM05D000007 ORTHO05D000017 1.5e-06 56.2 75 34.7
Medtr1g068835 Medicago truncatula HOM05D000007 ORTHO05D000017 2.0e-06 55.8 89 38.2
QL05p078700 Quercus lobata HOM05D000007 ORTHO05D000017 2.0e-06 55.8 82 36.6
CSS0049080 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.6e-06 55.5 78 37.2
Peaxi162Scf00231g00246 Petunia axillaris HOM05D000007 ORTHO05D000017 2.6e-06 55.5 81 35.8
Ciclev10033474m.g Citrus clementina HOM05D000007 ORTHO05D000017 3.4e-06 55.1 83 34.9
Medtr6g027890 Medicago truncatula HOM05D000007 ORTHO05D000017 3.4e-06 55.1 99 33.3
Sc05g0008370 Simmondsia chinensis HOM05D000007 ORTHO05D000017 3.4e-06 55.1 86 34.9
Haze_08874 Corylus avellana HOM05D000007 ORTHO05D000017 4.5e-06 54.7 66 42.4
Haze_25722 Corylus avellana HOM05D000007 ORTHO05D000017 4.5e-06 54.7 90 33.3
QL05p069384 Quercus lobata HOM05D000007 ORTHO05D000017 4.5e-06 54.7 83 33.7
PGSC0003DMG400035071 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.5e-06 54.7 83 31.3
MD08G1079600 Malus domestica HOM05D000007 ORTHO05D000017 5.9e-06 54.3 85 36.5
Sopen03g024680 Solanum pennellii HOM05D000007 ORTHO05D000017 5.9e-06 54.3 88 33.0
CAN.G2485.2 Capsicum annuum HOM05D000007 ORTHO05D000017 7.7e-06 53.9 85 36.5
CAN.G567.38 Capsicum annuum HOM05D000007 ORTHO05D000017 7.7e-06 53.9 85 36.5
Haze_05545 Corylus avellana HOM05D000007 ORTHO05D000017 7.7e-06 53.9 87 32.2
Haze_07636 Corylus avellana HOM05D000007 ORTHO05D000017 7.7e-06 53.9 80 30.0
Nitab4.5_0000097g0150 Nicotiana tabacum HOM05D000007 ORTHO05D000017 7.7e-06 53.9 53 43.4
Peaxi162Scf00009g02530 Petunia axillaris HOM05D000007 ORTHO05D000017 7.7e-06 53.9 78 37.2


User provided reference genes

Program Settings