Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 2840.8 1484 100.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1972.2 1502 72.8
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1956.4 1540 71.1
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1894.4 1506 71.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1886.3 1506 70.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1348.2 1004 73.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1338.6 1507 54.9
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 0.0e+00 1308.1 1519 54.1
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 0.0e+00 1307.4 1518 53.4
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 0.0e+00 1298.5 1512 54.4
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 0.0e+00 1257.7 1513 52.7
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1257.7 1516 53.7
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1245.7 1501 52.2
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 0.0e+00 1231.1 1510 52.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1229.5 1510 52.5
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 0.0e+00 1226.5 1451 53.1
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 0.0e+00 1221.1 1512 51.7
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 0.0e+00 1220.7 1510 52.2
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1207.2 1485 52.3
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 0.0e+00 1201.4 1448 53.0
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1190.3 1357 53.9
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 0.0e+00 1188.3 1528 51.3
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1135.9 1515 50.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 0.0e+00 1133.2 1489 49.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 0.0e+00 1128.2 1511 49.7
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1125.9 1507 49.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1117.8 1512 49.1
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 1107.4 1507 49.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1097.8 1513 48.2
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1087.0 1510 47.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1080.9 1501 47.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 0.0e+00 1077.4 1481 48.7
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.2e-310 1070.5 1379 49.6
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 5.3e-303 1045.0 1503 46.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-302 1043.9 1522 47.1
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 2.0e-302 1043.1 1522 47.2
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 7.7e-302 1041.2 1532 45.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 2.7e-291 1006.1 1276 51.2
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.0e-290 1004.2 1485 45.9
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 7.0e-287 991.5 1453 45.9
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.2e-286 990.7 1363 47.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.7e-285 986.9 1353 47.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 3.4e-281 972.6 1242 52.9
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 8.3e-280 968.0 1368 46.8
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.2e-278 964.1 1523 44.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 8.6e-277 958.0 1220 52.2
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 2.1e-275 953.4 1485 46.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 8.0e-275 951.4 1232 51.4
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.0e-273 946.8 1488 44.2
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.7e-272 943.7 1470 45.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 9.2e-271 937.9 1249 51.8
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 3.9e-269 932.6 1341 47.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 4.9e-264 915.6 1465 43.1
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.9e-263 913.7 1380 45.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 8.1e-259 898.3 1466 43.4
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 6.8e-258 895.2 1462 42.6
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 3.4e-257 892.9 1460 43.3
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 4.4e-257 892.5 1338 45.7
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.1e-252 877.9 1459 43.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.0e-245 854.7 1501 41.4
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 9.3e-239 831.6 1482 43.1
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.1e-234 818.1 1510 42.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 4.9e-232 809.3 1312 43.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.7e-229 798.9 1506 39.8
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.3e-227 794.7 1345 44.8
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.4e-226 790.4 1302 43.0
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 6.9e-226 788.9 1329 43.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.0e-225 787.3 1336 43.2
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.4e-225 786.6 1479 40.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.7e-224 784.3 1434 40.7
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-222 778.1 1332 42.0
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.2e-208 730.7 1319 43.2
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.2e-207 726.5 1366 40.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 6.7e-197 692.6 1495 37.9
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.4e-194 684.9 1443 39.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 7.7e-193 679.1 1472 38.5
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 4.2e-191 673.3 1438 38.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 9.4e-191 672.2 1287 41.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.8e-189 667.9 1291 39.5
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.7e-188 662.9 1465 37.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.7e-187 660.2 1516 37.8
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.1e-186 658.7 1438 38.0
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.8e-186 657.9 1438 38.0
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 3.5e-185 653.7 1443 37.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.6e-180 637.5 1317 38.2
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 9.7e-180 635.6 1484 36.4
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.5e-177 627.1 1475 37.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-176 625.5 1189 41.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 5.5e-175 619.8 1310 39.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.1e-174 617.8 1487 36.6
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 3.6e-174 617.1 1494 35.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.6e-172 610.9 1360 37.7
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 5.7e-172 609.8 1428 37.0
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.7e-169 600.9 692 55.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.6e-166 591.7 1365 36.5
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.6e-166 591.7 1365 36.5
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.0e-165 587.4 798 47.9
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.4e-154 552.0 1197 38.0
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.5e-151 541.2 667 49.6
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-150 538.9 873 42.5
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.1e-149 534.3 1249 35.6
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.5e-145 520.8 672 55.8
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-143 515.8 616 54.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 8.3e-139 499.6 1267 35.1
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 6.2e-126 456.8 579 50.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 7.6e-116 423.3 658 42.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.5e-111 409.1 1139 32.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-109 402.1 1302 32.3
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.8e-102 378.3 475 47.6
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.9e-99 368.2 619 41.8
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.9e-95 355.5 536 44.8
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 4.3e-95 354.4 507 48.5
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-94 352.4 333 60.1
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.9e-93 347.1 666 42.0
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.9e-92 344.0 304 72.0
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.2e-91 342.0 498 45.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 8.5e-91 340.1 412 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.1e-90 339.7 708 37.7
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.1e-81 308.9 299 59.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 4.5e-76 291.2 750 33.7
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 3.1e-69 268.5 517 37.9
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.5e-63 249.6 668 36.1
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-57 229.9 371 39.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.1e-53 216.9 257 52.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.0e-52 212.6 533 33.4
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.7e-52 212.2 539 32.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.6e-49 203.0 236 50.0
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 4.7e-49 201.4 548 30.5
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 8.0e-49 200.7 359 43.5
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.1e-45 190.3 152 60.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.6e-44 186.4 323 48.3
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-39 169.5 491 31.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.9e-38 165.6 714 25.8
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.4e-37 163.3 552 30.6
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 7.8e-36 157.5 539 29.3
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.2e-29 135.6 244 38.1
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 8.6e-19 100.9 441 26.3
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.3e-18 99.0 127 48.8
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.4e-15 89.0 69 62.3
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-14 85.5 112 62.5
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.4e-13 83.6 136 44.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-13 83.2 258 27.9
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.6e-09 70.1 568 24.3
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 2.1e-09 69.7 186 36.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.8e-09 69.3 56 62.5
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-08 66.2 186 34.9
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 4.0e-08 65.5 184 35.3


User provided reference genes

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