Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.8e-54 215.7 112 100.0
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.2e-35 151.4 108 72.2
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.6e-34 149.4 103 75.7
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 3.9e-33 144.8 113 69.0
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 3.9e-33 144.8 113 69.0
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 9.7e-32 140.2 108 72.2
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.8e-30 136.0 103 71.8
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 4.1e-30 134.8 109 69.7
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 6.5e-28 127.5 105 65.7
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 8.5e-28 127.1 105 65.7
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.9e-27 125.9 98 62.2
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.5e-27 125.6 103 65.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.5e-27 125.6 98 69.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.2e-27 125.2 104 64.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.2e-27 125.2 108 63.0
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.1e-26 122.5 102 64.7
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.1e-26 122.5 105 66.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-26 120.9 99 67.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.4e-25 119.8 99 66.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.4e-25 119.8 111 56.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.0e-25 118.6 108 63.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.9e-25 118.2 109 61.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 5.2e-25 117.9 100 61.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 8.8e-25 117.1 100 61.0
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-24 116.7 99 65.7
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.6e-24 115.5 100 59.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.4e-24 114.8 104 64.4
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.4e-24 114.0 97 61.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 9.7e-24 113.6 101 58.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 9.7e-24 113.6 111 51.4
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.7e-23 112.8 97 63.9
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.7e-23 111.7 100 56.0
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.8e-23 111.3 96 66.7
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.8e-23 111.3 96 66.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 2.4e-22 109.0 105 49.5
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 2.4e-22 109.0 105 49.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.1e-22 108.6 105 59.0
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 3.1e-22 108.6 110 58.2
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 3.1e-22 108.6 100 54.0
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 5.3e-22 107.8 108 58.3
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.0e-22 107.5 90 56.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.0e-22 107.5 90 56.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.6e-21 106.3 100 53.0
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-21 105.9 90 56.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.0e-21 105.9 97 60.8
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 3.5e-21 105.1 105 52.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.0e-20 103.6 98 56.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.2e-20 102.4 90 60.0
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.2e-20 102.4 111 48.6
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.2e-20 102.4 101 57.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.9e-20 102.1 89 65.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.8e-20 101.7 102 56.9
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 6.5e-20 100.9 100 52.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.9e-19 99.4 108 51.9
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.5e-19 99.0 87 65.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.2e-19 98.6 95 52.6
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.2e-19 98.6 102 55.9
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.2e-19 98.2 100 54.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 5.5e-19 97.8 87 65.5
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.5e-19 97.8 90 51.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 9.4e-19 97.1 90 55.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.4e-19 97.1 98 52.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.2e-18 96.7 102 51.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.6e-18 96.3 105 50.5
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.6e-18 96.3 90 57.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 3.6e-18 95.1 98 52.0
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.7e-18 94.7 98 52.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 6.1e-18 94.4 88 52.3
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 8.0e-18 94.0 90 55.6
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.3e-17 92.4 98 55.1
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.0e-17 92.0 98 51.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.0e-17 92.0 86 57.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 5.2e-17 91.3 101 49.5
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.8e-17 90.5 98 50.0
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.8e-17 90.5 93 49.5
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.2e-16 90.1 80 58.8
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.2e-16 90.1 97 48.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-16 88.6 86 55.8
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.3e-16 88.6 91 53.8
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.4e-16 88.2 89 55.1
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 7.5e-16 87.4 110 44.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 7.5e-16 87.4 95 46.3
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.7e-16 87.0 86 55.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 9.7e-16 87.0 92 53.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.3e-15 86.7 83 59.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 86 54.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 86 55.8
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 4.8e-15 84.7 107 45.8
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.8e-15 84.7 103 44.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.1e-14 83.6 87 51.7
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.1e-14 82.0 91 48.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.1e-14 81.6 102 45.1
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 4.1e-14 81.6 105 41.9
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 5.3e-14 81.3 105 45.7
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 9.1e-14 80.5 91 48.4
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.6e-13 79.7 102 44.1
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.0e-13 79.3 103 52.4
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 91 45.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.5e-13 78.2 72 55.6
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 5.9e-13 77.8 101 43.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 7.7e-13 77.4 105 48.6
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 3.8e-12 75.1 96 50.0
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.8e-12 75.1 101 43.6
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.0e-12 74.7 92 50.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 8.5e-12 73.9 96 46.9
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.1e-11 73.6 92 43.5
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-11 73.2 96 47.9
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.5e-11 73.2 96 47.9
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 3.2e-11 72.0 70 57.1
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.2e-11 72.0 96 49.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.5e-11 71.2 70 52.9
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.5e-11 71.2 105 40.0
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 7.2e-11 70.9 99 43.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.2e-11 70.9 93 50.5
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.2e-10 70.1 95 48.4
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.6e-10 69.7 95 48.4
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.7e-10 68.9 96 45.8
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.7e-10 68.9 71 50.7
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-10 68.6 95 44.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.6e-10 68.6 95 44.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.6e-10 68.6 72 47.2
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 4.7e-10 68.2 106 43.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 8.0e-10 67.4 83 45.8
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-09 66.6 96 42.7
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.4e-09 66.6 96 42.7
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-09 66.2 105 40.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.3e-09 65.9 95 43.2
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 4.0e-09 65.1 95 42.1
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 5.2e-09 64.7 94 43.6
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.8e-09 64.3 95 42.1
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 6.8e-09 64.3 95 42.1
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.8e-09 63.9 116 37.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.8e-09 63.9 116 37.1
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 8.8e-09 63.9 58 56.9
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.2e-08 63.5 116 36.2
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.2e-08 63.5 116 36.2
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 2.0e-08 62.8 64 48.4
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 2.0e-08 62.8 83 42.2
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.4e-08 62.0 110 36.4
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 4.4e-08 61.6 95 42.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 9.8e-08 60.5 85 44.7
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.3e-07 60.1 95 42.1
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 2.2e-07 59.3 68 47.1
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.2e-07 59.3 75 42.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.8e-07 58.2 75 42.7
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.8e-07 58.2 61 59.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 4.8e-07 58.2 75 41.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.3e-07 57.8 97 39.2
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 6.3e-07 57.8 127 33.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.3e-07 57.4 119 34.5
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.1e-06 57.0 75 41.3
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 4.1e-06 55.1 110 37.3
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 5.4e-06 54.7 70 50.0
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 5.4e-06 54.7 70 50.0
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 5.4e-06 54.7 70 50.0
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.4e-06 54.7 70 50.0
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.4e-06 54.7 75 45.3
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 9.1e-06 53.9 70 41.4
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 9.1e-06 53.9 70 41.4


User provided reference genes

Program Settings