Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 0.0e+00 1508.4 764 100.0
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1250.3 769 83.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1162.9 770 79.1
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1159.1 768 77.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 6.1e-295 1017.3 756 70.6
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.2e-293 1013.1 742 71.0
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 8.3e-292 1006.9 741 71.7
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 8.6e-289 996.9 748 67.8
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 3.3e-288 995.0 767 68.8
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 5.6e-288 994.2 768 68.5
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 1.2e-285 986.5 768 67.1
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 3.4e-285 984.9 758 67.0
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 1.3e-284 983.0 756 67.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 1.2e-282 976.5 754 67.4
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.3e-281 973.0 767 67.0
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.5e-280 968.8 744 67.9
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.3e-280 968.4 742 67.4
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.8e-279 965.3 744 67.6
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 1.7e-276 956.1 732 67.1
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 1.2e-274 949.9 756 65.6
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 1.1e-272 943.3 766 64.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 1.1e-270 936.8 737 68.0
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.6e-269 932.2 754 65.3
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 2.6e-269 932.2 767 65.7
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 2.9e-268 928.7 752 65.3
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 8.3e-268 927.2 776 63.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 1.9e-267 926.0 733 65.3
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 3.5e-266 921.8 736 66.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.7e-263 911.4 731 65.4
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.7e-263 911.4 756 63.0
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 1.8e-262 909.4 756 62.7
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 8.9e-262 907.1 735 63.4
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 2.0e-261 906.0 760 63.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 3.4e-261 905.2 774 63.0
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 2.9e-260 902.1 765 62.5
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 2.9e-260 902.1 759 64.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 4.9e-260 901.4 735 66.0
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 4.1e-259 898.3 744 63.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 2.1e-258 896.0 753 61.9
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 3.5e-258 895.2 744 62.9
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 1.3e-257 893.3 755 62.4
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 1.7e-257 892.9 754 62.3
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 1.7e-257 892.9 750 62.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 5.1e-257 891.3 759 61.8
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 1.9e-256 889.4 759 63.0
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 4.3e-256 888.3 764 62.8
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 4.7e-255 884.8 766 61.1
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 1.8e-254 882.9 753 62.2
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 4.0e-254 881.7 737 62.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 4.0e-254 881.7 737 62.7
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 5.2e-254 881.3 758 61.7
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 2.0e-253 879.4 734 63.4
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 3.8e-252 875.2 748 62.4
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 3.8e-252 875.2 752 61.7
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 8.4e-252 874.0 752 61.0
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 5.4e-251 871.3 764 60.6
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 9.3e-251 870.5 766 61.1
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 1.2e-250 870.2 760 59.5
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 7.8e-250 867.5 748 61.8
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 1.0e-249 867.1 751 61.5
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.7e-249 866.3 759 61.7
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.1e-248 863.6 762 61.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 1.5e-248 863.2 761 61.1
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.9e-248 862.8 763 60.4
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 4.8e-247 858.2 758 60.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.2e-245 853.6 765 60.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 1.2e-245 853.6 760 58.7
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 9.9e-245 850.5 764 60.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 2.1e-242 842.8 782 58.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.3e-241 840.1 773 59.5
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.7e-241 837.8 751 60.1
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 8.7e-241 837.4 790 58.1
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.1e-238 828.9 779 58.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 5.3e-238 828.2 748 60.0
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.1e-235 820.5 746 59.7
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 2.4e-235 819.3 757 59.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 9.3e-235 817.4 783 57.9
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 9.6e-232 807.4 760 58.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 1.3e-231 807.0 737 59.0
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.1e-231 806.2 731 59.5
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.5e-229 800.0 783 57.0
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 6.5e-228 794.7 700 60.9
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 4.2e-227 792.0 760 57.1
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 2.4e-222 776.2 745 57.2
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.0e-217 760.8 815 54.1
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 2.4e-206 723.0 825 51.8
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 6.5e-204 714.9 750 53.9
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 8.0e-202 708.0 780 52.7
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.4e-201 707.2 798 53.1
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 6.1e-194 681.8 584 62.7
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.0e-193 679.5 550 66.7
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.3e-175 618.2 710 48.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 9.2e-174 614.8 749 49.3
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.2e-170 604.4 671 50.5
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 4.0e-161 572.8 434 70.5
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.3e-156 557.0 697 47.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.1e-155 554.7 743 43.3
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.4e-136 489.6 685 43.5
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.3e-132 478.0 400 66.2
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.7e-127 461.1 547 48.3
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.3e-123 446.8 549 48.1
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.8e-108 397.9 390 55.1
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.3e-103 381.7 515 42.7
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-102 378.6 493 45.2
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 9.1e-97 359.0 680 34.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.8e-92 344.7 656 34.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.2e-85 322.0 568 37.5
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.6e-85 320.5 290 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.8e-84 318.2 709 32.4
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.6e-80 304.3 247 59.9
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.4e-49 202.2 191 57.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.6e-45 187.6 232 42.2
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.6e-45 187.6 232 42.2
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-43 181.0 690 25.8
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 1.9e-33 148.7 416 29.1
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.0e-31 142.9 97 76.3
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.9e-26 124.8 100 64.0
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 1.1e-25 122.9 178 42.1
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 1.9e-22 112.1 366 26.5
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.3e-21 109.4 75 66.7
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-19 102.8 204 33.3
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.6e-19 101.7 164 36.0
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.9e-18 98.2 92 62.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.1e-12 79.7 68 60.3
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.1e-12 78.2 242 28.5
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 5.3e-12 77.4 69 55.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 9.3e-09 66.6 53 62.3
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 1.0e-07 63.2 163 31.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 2.3e-07 62.0 229 26.2


User provided reference genes

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