Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.4e-66 256.1 125 100.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 9.4e-52 206.8 127 79.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.6e-51 204.9 125 78.4
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.0e-50 203.4 125 78.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 8.8e-50 200.3 125 77.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.9e-44 182.6 121 70.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.6e-43 179.5 121 67.8
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.5e-41 172.9 124 66.1
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.1e-39 166.8 122 64.8
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 2.7e-38 162.2 124 62.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 4.5e-38 161.4 124 63.7
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 9.5e-36 153.7 125 60.8
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 6.1e-35 151.0 113 66.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 6.1e-35 151.0 127 58.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.8e-34 149.4 110 64.5
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.8e-34 149.4 122 58.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.0e-34 148.7 106 63.2
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.0e-34 148.3 107 65.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 6.8e-34 147.5 107 65.4
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.8e-34 147.5 108 60.2
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 8.9e-34 147.1 110 66.4
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.2e-33 146.7 107 62.6
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.2e-33 146.7 108 59.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.2e-33 146.7 108 59.3
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.5e-33 146.4 129 56.6
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.0e-33 146.0 106 63.2
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 4.4e-33 144.8 127 58.3
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 4.9e-32 141.4 117 60.7
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.9e-32 141.4 127 55.1
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.8e-31 139.4 114 60.5
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.4e-31 139.0 127 55.9
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.6e-30 136.3 127 56.7
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 1.6e-30 136.3 109 59.6
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 2.0e-30 136.0 129 53.5
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-29 133.3 108 62.0
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 6.6e-29 131.0 108 61.1
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 8.6e-29 130.6 124 52.4
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.5e-28 129.8 111 58.6
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.5e-28 129.0 123 50.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 3.3e-28 128.6 116 56.9
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.3e-28 128.3 108 60.2
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 4.3e-28 128.3 123 50.4
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-27 126.7 109 60.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-27 126.7 109 60.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.2e-27 126.7 114 56.1
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 1.6e-27 126.3 110 63.6
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.8e-27 125.6 113 54.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 4.7e-27 124.8 121 54.5
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 4.0e-26 121.7 114 56.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 4.0e-26 121.7 114 56.1
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 4.0e-26 121.7 106 57.5
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.0e-26 121.7 112 52.7
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 1.5e-25 119.8 117 55.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.5e-25 119.8 114 55.3
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.5e-25 119.8 106 50.9
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.4e-25 118.2 108 52.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.8e-25 117.9 108 52.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 7.5e-25 117.5 109 54.1
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.7e-24 116.3 107 58.9
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.9e-24 115.5 108 57.4
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.9e-24 115.5 108 54.6
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.9e-24 114.8 124 46.8
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.9e-24 114.8 126 53.2
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.1e-23 113.6 108 50.0
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 5.4e-23 111.3 106 54.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 7.0e-23 110.9 110 52.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 2.0e-22 109.4 120 50.8
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 3.5e-22 108.6 109 46.8
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.0e-21 107.1 116 48.3
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-21 107.1 113 52.2
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 3.0e-21 105.5 120 45.8
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 3.9e-21 105.1 113 51.3
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.1e-20 103.6 116 51.7
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 1.1e-20 103.6 107 48.6
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.5e-20 103.2 108 51.9
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.3e-20 102.1 113 48.7
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.3e-20 100.9 122 39.3
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-19 99.8 108 53.7
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.6e-19 99.8 108 53.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 3.6e-19 98.6 109 47.7
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-18 97.1 108 50.9
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.3e-18 95.9 109 47.7
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.1e-18 95.5 122 44.3
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.0e-18 95.1 122 42.6
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 1.2e-17 93.6 110 47.3
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.5e-17 93.2 122 43.4
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.0e-17 92.8 132 45.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.4e-17 91.7 116 44.8
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 5.8e-17 91.3 110 44.5
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-16 90.1 108 45.4
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-16 89.7 108 47.2
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.7e-16 89.7 108 45.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.2e-16 89.4 111 45.9
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 3.7e-16 88.6 106 46.2
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 3.7e-16 88.6 107 48.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 6.4e-16 87.8 117 46.2
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 6.4e-16 87.8 119 35.3
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 8.3e-16 87.4 85 58.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.1e-15 87.0 104 41.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.4e-15 86.7 120 40.0
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 5.4e-15 84.7 108 41.7
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 9.2e-15 84.0 122 39.3
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.2e-15 84.0 106 47.2
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.6e-14 83.2 120 42.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 2.1e-14 82.8 129 42.6
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.1e-14 82.8 120 42.5
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.5e-14 82.0 114 37.7
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 6.0e-14 81.3 107 42.1
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 7.8e-14 80.9 126 38.9
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.0e-13 80.5 120 40.0
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-13 79.7 111 43.2
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.7e-13 79.7 111 43.2
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.7e-13 79.7 111 43.2
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.3e-13 79.3 115 43.5
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 3.0e-13 79.0 105 46.7
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 5.1e-13 78.2 133 36.1
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 5.1e-13 78.2 101 44.6
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 6.6e-13 77.8 111 42.3
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 2.5e-12 75.9 109 36.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 3.3e-12 75.5 105 40.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 4.3e-12 75.1 110 41.8
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.6e-12 74.7 124 35.5
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 5.6e-12 74.7 107 42.1
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 7.3e-12 74.3 97 45.4
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.6e-11 73.2 124 34.7
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.8e-11 72.4 107 43.0
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.8e-11 72.4 112 41.1
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 3.6e-11 72.0 120 35.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.6e-11 72.0 115 34.8
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 4.7e-11 71.6 103 38.8
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 6.2e-11 71.2 111 36.0
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 8.1e-11 70.9 115 39.1
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-10 70.5 108 41.7
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-10 70.5 108 41.7
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 1.8e-10 69.7 102 40.2
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 2.3e-10 69.3 129 34.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.0e-10 68.6 113 33.6
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 6.8e-10 67.8 106 36.8
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.2e-09 67.0 86 51.2
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.2e-09 67.0 117 36.8
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.0e-09 66.2 106 40.6
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 9.9e-09 63.9 150 34.0
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.7e-08 63.2 120 32.5
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.2e-08 62.8 107 32.7
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.9e-08 62.4 93 46.2
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 1.4e-07 60.1 116 36.2
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.4e-07 59.3 53 56.6
Lsat_1_v5_gn_5_5200 Lactuca sativa HOM05D007823 ORTHO05D000174 1.6e-06 56.6 49 57.1
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 4.6e-06 55.1 59 42.4


User provided reference genes

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