Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.6e-106 389.4 200 100.0
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.4e-73 279.3 200 78.5
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 6.9e-73 277.7 200 77.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.4e-72 275.4 200 77.0
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 8.2e-66 254.2 190 74.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.2e-61 240.4 207 64.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.0e-60 235.3 208 66.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.8e-58 229.2 215 62.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.8e-58 229.2 212 62.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.8e-58 228.4 208 63.0
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.4e-57 226.1 207 62.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.7e-56 222.6 206 61.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 4.2e-54 215.3 212 62.7
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.2e-54 215.3 213 61.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.7e-53 212.6 206 59.7
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.0e-53 211.1 206 59.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-52 209.9 201 61.7
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.3e-52 209.5 205 59.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.0e-51 206.5 198 62.6
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.7e-51 204.9 209 58.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.5e-51 204.5 201 60.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.8e-50 202.6 193 64.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-49 199.1 206 59.2
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.7e-48 196.1 206 57.8
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.7e-48 194.5 206 57.8
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.9e-47 192.6 210 57.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.5e-47 191.4 198 57.6
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.1e-46 190.7 198 58.1
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.5e-46 190.3 199 58.8
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.5e-46 190.3 199 58.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 7.2e-46 188.0 197 59.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 8.9e-44 181.0 203 56.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.5e-43 180.3 186 61.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 7.5e-43 177.9 191 56.5
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 9.8e-43 177.6 187 55.6
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.7e-42 176.8 187 55.1
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.1e-41 172.6 204 51.0
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.1e-41 172.2 206 51.9
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-40 170.2 193 54.4
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.7e-40 169.5 206 54.4
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.9e-40 168.3 202 54.5
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.9e-40 168.3 216 51.4
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.0e-39 167.5 180 58.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.3e-39 167.2 204 54.4
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.3e-39 167.2 215 53.5
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.6e-39 164.9 216 52.3
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 3.3e-38 162.5 194 58.8
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.8e-37 159.5 196 52.0
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.0e-36 157.5 210 49.5
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-36 157.5 207 50.7
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.0e-36 157.5 207 50.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.4e-36 157.1 195 51.8
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.8e-36 156.8 212 49.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 6.8e-36 154.8 184 53.3
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.6e-35 152.9 194 53.1
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.4e-35 152.5 209 52.6
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.4e-35 152.5 211 48.8
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.4e-35 152.5 183 51.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 4.4e-35 152.1 181 53.6
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 5.8e-35 151.8 194 52.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.5e-35 151.4 206 51.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.9e-34 149.4 184 51.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.9e-34 149.4 193 48.7
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.4e-33 147.1 185 51.9
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.4e-33 146.4 199 53.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.1e-33 145.6 196 48.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.2e-33 144.4 189 49.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.0e-32 143.3 188 50.0
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-31 140.6 199 50.3
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 2.3e-31 139.8 174 52.9
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.9e-31 139.0 150 59.3
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 8.6e-31 137.9 211 44.5
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.5e-30 137.1 191 49.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 4.3e-30 135.6 170 54.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 5.6e-30 135.2 180 48.9
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 7.3e-30 134.8 196 48.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 2.1e-29 133.3 198 51.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.1e-28 131.0 212 44.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.4e-28 130.6 176 52.3
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.8e-28 130.2 212 45.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.1e-28 129.4 164 50.0
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 6.8e-28 128.3 207 45.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 8.9e-28 127.9 189 45.0
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.0e-27 126.7 174 51.7
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 5.8e-27 125.2 209 39.7
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.7e-26 123.6 172 50.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.7e-26 123.6 203 46.3
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.2e-26 123.2 185 42.7
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.9e-26 122.9 158 50.0
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 4.9e-26 122.1 216 40.7
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.4e-26 121.7 194 46.9
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.1e-25 120.9 190 43.7
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.4e-25 119.8 185 48.1
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 9.2e-25 117.9 185 44.9
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 9.2e-25 117.9 205 46.8
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.2e-24 117.5 189 45.5
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 7.8e-24 114.8 165 47.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.3e-23 114.0 186 46.8
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 6.6e-23 111.7 142 53.5
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 6.6e-23 111.7 180 45.0
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.6e-23 111.3 162 46.9
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.5e-22 110.5 204 46.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 5.6e-22 108.6 193 42.0
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-21 107.1 137 52.6
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.6e-21 107.1 185 42.2
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 3.6e-21 105.9 168 45.2
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 6.2e-21 105.1 211 38.4
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 6.2e-21 105.1 132 51.5
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.8e-20 103.6 188 39.4
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 3.1e-20 102.8 221 39.8
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 5.2e-20 102.1 209 38.3
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 5.2e-20 102.1 195 42.1
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.6e-19 99.8 193 41.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 9.9e-19 97.8 187 41.2
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 9.9e-19 97.8 183 43.7
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 9.9e-19 97.8 185 40.5
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-18 97.4 185 40.5
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.2e-18 96.7 167 40.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.9e-18 96.3 185 40.0
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.9e-18 96.3 185 40.0
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.7e-18 95.9 187 39.6
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 6.4e-18 95.1 187 40.1
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.4e-18 95.1 191 41.9
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 8.3e-18 94.7 177 41.8
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.4e-17 93.2 192 41.7
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 3.2e-17 92.8 177 41.2
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 5.4e-17 92.0 206 40.3
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 5.4e-17 92.0 173 42.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 7.1e-17 91.7 177 41.2
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.1e-17 91.7 169 42.6
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 7.1e-17 91.7 177 41.2
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.1e-16 90.1 188 43.1
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-16 90.1 149 45.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.7e-16 89.7 188 42.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.6e-16 89.0 187 40.6
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 6.0e-16 88.6 177 41.2
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 7.8e-16 88.2 152 41.4
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-15 87.4 183 39.3
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 3.0e-15 86.3 88 55.7
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 2.5e-14 83.2 202 40.6
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 3.3e-14 82.8 167 40.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-13 80.9 195 40.0
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 3.6e-13 79.3 182 38.5
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 1.1e-12 77.8 227 30.4
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.8e-12 77.0 190 36.8
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.2e-12 75.5 63 58.7
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-11 74.3 168 36.3
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 2.0e-11 73.6 64 57.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 7.6e-11 71.6 86 51.2
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-10 70.9 126 47.6
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 1.7e-10 70.5 178 33.7
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.9e-10 69.7 156 39.1
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 3.8e-10 69.3 188 38.3
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 4.9e-10 68.9 176 38.6
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 6.4e-10 68.6 62 59.7
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 1.4e-09 67.4 90 46.7
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.4e-09 67.4 112 41.1
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.9e-09 67.0 85 50.6
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 5.4e-09 65.5 171 38.6
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.6e-08 63.9 126 40.5
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 2.7e-08 63.2 58 55.2
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 1.0e-07 61.2 209 28.7
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 1.9e-06 57.0 87 40.2
Zm00001eb323150 Zea mays HOM05D035907 ORTHO05D004706 1.9e-06 57.0 49 53.1
MBI06_g19436_MAGBIO Magnolia biondii HOM05D009517 ORTHO05D011612 7.3e-06 55.1 177 28.2


User provided reference genes

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