Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 6.2e-208 727.2 376 100.0
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 4.2e-180 634.8 376 80.3
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 3.7e-168 595.1 376 75.8
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 4.1e-151 538.5 373 71.0
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.6e-150 536.6 384 69.8
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 4.5e-150 535.0 373 67.8
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 4.5e-150 535.0 378 67.7
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 1.3e-149 533.5 373 68.6
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 2.3e-149 532.7 379 69.7
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 3.8e-149 531.9 378 68.8
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 8.6e-149 530.8 376 67.8
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 1.1e-148 530.4 374 69.5
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.9e-148 529.6 379 67.8
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 1.9e-148 529.6 371 70.1
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 4.2e-148 528.5 379 67.3
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 7.2e-148 527.7 377 68.4
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 7.2e-148 527.7 379 67.3
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 9.5e-148 527.3 377 68.4
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 1.2e-147 526.9 377 67.6
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 1.6e-147 526.6 372 70.4
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 1.5e-145 520.0 378 68.3
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 2.0e-145 519.6 378 66.9
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 1.7e-144 516.5 378 68.3
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 2.9e-144 515.8 380 68.2
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 4.9e-144 515.0 372 66.9
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 8.3e-144 514.2 399 65.2
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 8.3e-144 514.2 378 64.0
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 1.4e-143 513.5 380 67.9
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.8e-143 513.1 374 67.4
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.2e-143 510.8 380 67.4
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 1.6e-142 510.0 374 67.4
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.7e-142 509.2 380 67.4
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 4.6e-142 508.4 371 64.4
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.3e-141 506.9 381 67.5
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 2.3e-141 506.1 378 65.9
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 3.9e-141 505.4 371 64.2
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 1.9e-140 503.1 374 64.7
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 1.0e-138 497.3 377 62.9
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 7.5e-137 491.1 377 66.8
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 2.4e-135 486.1 373 61.7
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 4.1e-135 485.3 373 62.5
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 4.6e-134 481.9 371 62.5
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 7.8e-134 481.1 378 60.8
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 1.0e-133 480.7 373 61.7
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 8.6e-133 477.6 373 61.1
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 1.1e-132 477.2 373 61.1
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 2.5e-132 476.1 378 63.2
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 2.5e-132 476.1 365 62.5
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 3.6e-131 472.2 381 61.2
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 6.2e-131 471.5 373 61.4
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 1.4e-130 470.3 375 63.2
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 1.4e-130 470.3 378 60.6
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.8e-130 469.9 372 61.0
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.8e-130 469.9 379 60.9
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 1.8e-130 469.9 375 63.7
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 3.1e-130 469.2 353 66.3
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 4.0e-130 468.8 375 62.4
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 5.2e-130 468.4 379 61.2
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 8.9e-130 467.6 380 61.1
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 1.2e-129 467.2 374 61.2
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.5e-129 466.8 380 63.7
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 4.4e-129 465.3 380 61.3
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 7.5e-129 464.5 372 61.8
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 2.9e-128 462.6 377 59.7
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 3.2e-127 459.1 372 61.3
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.0e-125 454.1 375 60.5
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.3e-125 453.8 375 60.5
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.9e-124 449.9 363 61.4
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.5e-124 449.5 370 59.5
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 4.0e-122 442.2 386 58.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-121 440.7 364 60.4
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 4.4e-121 438.7 368 60.1
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.7e-120 436.8 364 57.7
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 6.4e-120 434.9 403 57.1
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 1.7e-117 426.8 370 57.3
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 5.1e-117 425.2 375 59.2
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 9.9e-113 411.0 372 54.0
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 1.4e-111 407.1 369 57.7
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 1.0e-101 374.4 251 69.3
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 2.4e-90 336.7 375 45.1
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 7.6e-89 331.6 400 45.0
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 1.3e-88 330.9 394 46.4
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.0e-85 321.2 317 52.7
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 2.6e-81 306.6 183 82.5
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 3.4e-81 306.2 223 65.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.1e-76 291.2 351 47.0
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.5e-73 280.8 298 50.0
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 2.6e-73 280.0 185 68.6
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 6.5e-72 275.4 381 40.2
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 3.3e-68 263.1 208 63.5
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 1.8e-66 257.3 221 58.4
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 9.1e-66 255.0 208 59.6
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 2.0e-65 253.8 369 38.2
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.3e-64 251.1 186 67.7
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 4.8e-59 232.6 251 49.0
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 8.2e-59 231.9 182 62.6
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 1.8e-58 230.7 375 36.3
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 5.3e-58 229.2 233 52.8
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 1.7e-56 224.2 414 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 3.2e-55 219.9 316 39.2
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 8.0e-54 215.3 212 54.2
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 8.0e-54 215.3 212 54.2
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 4.0e-53 213.0 180 60.0
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 2.2e-51 207.2 148 64.2
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 9.8e-44 181.8 140 65.7
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.8e-42 177.6 141 63.8
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.7e-41 173.7 101 78.2
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.0e-40 171.8 149 61.7
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 3.2e-39 166.8 116 63.8
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 4.2e-39 166.4 153 54.9
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 1.2e-38 164.9 236 43.2
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 3.6e-38 163.3 115 66.1
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.8e-21 107.8 100 46.0
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 4.0e-21 106.7 172 38.4
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.1e-18 98.6 76 68.4
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.4e-18 98.2 81 64.2
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.4e-18 98.2 69 68.1
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 9.2e-18 95.5 62 69.4
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 2.0e-17 94.4 162 43.8
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.3e-16 91.7 336 25.9
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 1.3e-16 91.7 115 49.6
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.6e-14 83.6 190 36.3
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.1e-13 82.0 347 24.2
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 1.1e-07 62.0 33 78.8


User provided reference genes

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