Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 2.5e-289 998.0 495 100.0
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.5e-206 723.0 467 79.4
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.4e-204 716.5 466 78.5
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 2.0e-201 706.1 448 81.0
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 3.7e-200 701.8 463 78.2
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 7.0e-199 697.6 463 77.8
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.7e-197 693.0 408 83.8
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.5e-197 691.0 459 76.7
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 2.5e-196 689.1 464 77.8
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 2.1e-195 686.0 462 77.3
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.1e-195 686.0 460 77.2
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 4.7e-195 684.9 461 77.2
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 6.1e-195 684.5 461 76.4
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.3e-194 682.6 463 75.2
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 6.7e-194 681.0 386 87.8
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 3.3e-193 678.7 460 75.9
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 4.4e-193 678.3 455 76.3
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 5.7e-193 677.9 455 76.5
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.7e-192 676.4 468 75.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.7e-192 676.4 473 74.2
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 6.3e-192 674.5 443 77.4
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 8.2e-192 674.1 504 71.4
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.4e-191 673.3 468 74.8
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 9.1e-191 670.6 400 82.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.6e-190 669.8 468 74.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.7e-190 669.1 395 83.3
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.7e-190 669.1 411 81.3
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 6.5e-189 664.5 466 74.0
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 8.5e-189 664.1 467 73.7
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.2e-188 662.1 401 82.5
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 4.2e-188 661.8 460 73.9
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.2e-187 660.2 492 71.5
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 2.7e-187 659.1 400 81.2
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 3.6e-187 658.7 418 79.2
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 8.0e-187 657.5 400 81.0
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 6.8e-186 654.4 432 77.1
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 8.8e-186 654.1 386 83.7
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.4e-185 651.7 425 79.8
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.1e-183 647.1 447 74.9
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.4e-183 646.7 381 84.0
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 9.1e-183 644.0 412 77.9
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 1.6e-182 643.3 404 79.7
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.0e-181 640.6 382 84.0
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.9e-180 636.3 453 74.8
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 5.5e-180 634.8 433 74.1
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 9.5e-180 634.0 401 79.6
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 2.1e-179 632.9 474 69.8
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 6.1e-179 631.3 589 61.1
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.8e-178 629.8 433 73.7
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 5.2e-178 628.2 435 74.3
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 5.2e-178 628.2 433 76.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 2.0e-177 626.3 399 77.2
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 2.0e-177 626.3 423 74.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.5e-177 624.4 430 73.7
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.3e-176 623.6 435 72.6
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.8e-176 622.5 374 83.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.8e-175 619.8 431 73.3
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 2.7e-174 615.9 447 70.7
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 5.9e-174 614.8 479 68.3
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 5.9e-174 614.8 454 70.3
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 1.7e-173 613.2 451 70.1
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.1e-172 610.5 446 70.0
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 2.1e-171 606.3 463 68.9
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 4.7e-171 605.1 386 77.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.4e-170 603.6 383 79.9
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 3.0e-170 602.4 517 63.8
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.6e-169 599.4 414 74.2
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.9e-168 595.9 471 67.3
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 6.4e-168 594.7 420 72.9
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 5.4e-167 591.7 412 74.3
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.0e-167 591.3 450 70.4
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.0e-165 585.1 497 64.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.6e-163 580.1 457 68.9
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 3.6e-163 578.9 354 81.6
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 2.8e-155 552.7 401 69.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.6e-155 552.4 348 81.3
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.1e-154 550.8 391 73.1
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.4e-151 540.4 459 64.5
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.9e-149 532.3 462 63.0
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-148 530.4 456 65.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 2.8e-147 526.2 414 68.1
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 3.6e-147 525.8 417 68.6
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 8.1e-147 524.6 455 63.7
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.1e-146 524.2 357 75.9
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.9e-144 516.2 382 67.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.4e-143 513.8 403 66.0
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 9.2e-143 511.1 398 66.1
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 6.0e-142 508.4 414 65.2
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 1.0e-133 481.1 288 82.6
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.9e-128 463.0 366 68.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.3e-125 453.4 345 69.3
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-119 434.1 262 82.8
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 2.4e-119 433.3 306 74.8
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.6e-115 420.6 404 53.5
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 1.2e-113 414.5 399 55.4
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.7e-112 410.6 274 75.2
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 6.3e-107 392.1 469 48.8
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 1.0e-96 358.2 251 76.1
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.1e-94 350.5 538 43.5
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 6.9e-90 335.5 203 78.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.8e-85 320.9 250 71.6
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.3e-84 316.6 254 71.3
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.2e-81 308.1 256 68.0
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.2e-78 298.1 185 78.4
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.1e-78 297.4 185 77.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 3.0e-77 293.5 173 84.4
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.0e-72 278.5 193 71.5
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 9.4e-71 271.9 168 82.7
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 2.2e-67 260.8 155 82.6
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-66 257.7 326 48.5
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 7.0e-66 255.8 230 61.7
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.5e-65 253.4 207 69.1
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.8e-61 241.1 189 69.8
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 6.8e-61 239.2 250 58.0
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 6.8e-61 239.2 250 58.0
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 6.8e-61 239.2 250 58.0
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 2.6e-60 237.3 137 83.9
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 9.8e-60 235.3 261 57.1
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.0e-53 213.8 162 64.2
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 6.4e-51 206.1 137 73.7
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 8.6e-48 195.7 152 72.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 5.2e-45 186.4 126 72.2
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.7e-43 181.4 106 84.0
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.3e-37 161.0 94 80.9
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 1.7e-35 154.8 154 60.4
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 4.9e-35 153.3 144 54.2
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 8.9e-29 132.5 93 75.3
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.4e-28 130.6 93 74.2
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 4.4e-28 130.2 126 57.9
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-27 128.3 74 79.7
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.5e-25 120.6 74 78.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.1e-21 109.0 165 39.4
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 9.0e-21 105.9 86 60.5
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 3.8e-19 100.5 62 77.4
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.4e-18 98.6 181 37.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 2.5e-15 87.8 58 74.1
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.7e-11 75.1 151 35.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 3.8e-11 73.9 115 39.1
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 5.1e-08 63.5 132 36.4


User provided reference genes

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