Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.0e-299 1030.4 543 100.0
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.9e-253 879.0 549 83.1
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.1e-241 839.0 551 79.1
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.2e-238 828.9 550 77.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.4e-237 826.2 545 78.5
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.4e-237 825.5 550 76.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 3.2e-237 825.1 556 76.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.6e-235 817.0 552 75.0
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.5e-234 813.5 549 75.8
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.4e-232 808.9 554 75.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.8e-232 807.4 554 74.7
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.6e-231 805.4 550 75.6
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 9.9e-231 803.5 554 74.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-230 803.1 554 74.5
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-230 803.1 548 75.2
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.0e-227 792.0 550 74.7
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 6.6e-227 790.8 545 73.4
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.1e-226 790.0 552 72.8
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 7.3e-226 787.3 556 72.3
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 3.6e-225 785.0 551 72.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.2e-225 784.3 550 74.0
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.4e-224 783.1 545 72.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.0e-224 781.6 558 73.7
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.7e-222 776.2 553 71.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.6e-220 769.6 553 71.8
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-219 765.4 553 71.4
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 3.9e-219 765.0 562 71.0
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.6e-218 761.1 553 70.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.1e-216 755.4 551 71.0
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 6.9e-216 754.2 548 74.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.5e-215 753.1 559 69.2
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-215 752.7 545 70.6
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.5e-215 751.5 548 74.1
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 7.6e-215 750.7 545 70.6
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.8e-214 748.4 555 69.9
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.1e-213 746.9 547 73.3
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-213 746.9 557 69.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-213 744.6 547 71.5
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-213 744.6 547 71.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.8e-211 739.6 558 69.0
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.8e-211 739.6 555 69.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.3e-211 739.2 554 68.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.1e-211 738.0 558 69.5
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 6.7e-211 737.6 548 70.1
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.7e-211 737.6 559 69.2
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.9e-210 736.1 559 68.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.4e-210 734.2 489 76.1
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.7e-209 731.9 552 68.7
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.1e-208 730.3 503 79.9
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-208 729.6 549 69.0
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 6.9e-208 727.6 555 68.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-207 726.9 568 67.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.5e-207 724.9 567 70.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.9e-205 719.5 560 68.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 5.5e-205 718.0 566 67.7
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.6e-204 714.9 559 67.1
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 6.0e-204 714.5 565 65.7
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-203 713.4 567 65.4
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-203 713.0 565 65.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-203 713.0 565 65.7
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.8e-203 713.0 565 65.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.0e-203 712.2 555 67.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 8.7e-203 710.7 567 66.0
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-202 710.3 534 69.5
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.3e-202 708.8 564 65.4
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.7e-202 708.0 547 67.8
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 6.2e-201 704.5 554 67.5
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 8.2e-201 704.1 566 66.3
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.1e-200 703.7 573 64.6
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-200 703.7 553 65.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.3e-200 701.4 579 63.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-199 700.3 562 66.4
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-199 699.9 548 69.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-199 699.1 548 69.2
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-198 697.2 549 70.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-198 697.2 566 66.3
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.2e-198 696.0 549 69.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.9e-198 695.7 554 67.9
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-197 693.7 541 69.1
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-197 693.3 548 69.5
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.5e-197 691.4 548 69.5
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 7.1e-197 691.0 561 64.9
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.9e-194 682.9 552 67.0
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 6.3e-193 677.9 554 64.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-192 676.4 540 63.5
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 5.3e-192 674.9 565 63.0
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 7.7e-191 671.0 550 64.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 3.8e-190 668.7 444 77.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.9e-189 666.4 452 73.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 4.2e-189 665.2 549 63.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.6e-188 663.3 556 63.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.6e-188 662.1 560 62.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 7.9e-188 661.0 548 65.3
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.0e-187 660.6 444 73.0
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.8e-187 659.8 547 64.2
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.1e-186 657.1 547 63.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.5e-186 656.8 549 62.5
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-186 656.4 548 65.0
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.4e-186 654.4 549 65.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.4e-186 654.4 547 64.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.2e-185 652.9 552 62.7
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 2.2e-185 652.9 548 61.9
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.2e-185 652.9 560 59.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-184 649.4 564 62.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.3e-184 648.3 412 78.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.9e-182 642.5 569 62.0
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 5.0e-182 641.7 546 61.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 2.1e-180 636.3 548 62.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.9e-179 632.1 549 62.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-176 623.6 526 63.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 2.4e-176 622.9 553 62.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.7e-169 600.1 548 60.0
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.2e-169 599.7 547 61.1
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-168 597.0 401 72.8
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.6e-167 592.8 580 56.6
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.0e-163 578.9 551 57.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 9.8e-162 574.3 338 82.2
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-161 573.9 528 59.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.7e-161 573.5 384 72.1
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.1e-160 568.9 550 58.5
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.8e-158 562.4 538 58.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 7.0e-152 541.6 549 53.9
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 9.5e-149 531.2 504 56.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.1e-144 515.8 301 83.1
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 9.8e-138 494.6 472 62.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 6.0e-127 458.8 442 48.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 3.6e-108 396.4 385 57.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 9.3e-104 381.7 314 68.8
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.1e-101 374.8 374 47.1
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.6e-100 370.9 500 47.4
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.4e-91 340.5 197 83.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.1e-91 340.1 369 51.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.9e-89 333.6 358 53.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.6e-85 318.5 262 62.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-82 311.2 210 71.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.3e-75 286.2 155 87.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 9.1e-59 232.3 199 59.3
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 7.2e-56 222.6 207 61.8
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.7e-52 210.3 261 51.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.3e-46 191.0 173 61.3
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.6e-42 178.3 276 40.9
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-36 157.1 96 76.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.1e-35 154.1 473 26.8
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-35 152.9 91 78.0
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.9e-25 120.6 79 72.2
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 9.5e-24 115.9 74 73.0
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 8.0e-23 112.8 69 75.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 8.0e-23 112.8 69 75.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.8e-22 111.7 115 53.0
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-20 105.5 152 44.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.0e-18 98.2 180 31.1
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.3e-16 90.5 73 61.6
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-15 89.0 51 80.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.2e-12 78.2 79 53.2
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.9e-12 77.8 129 38.0
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.3e-08 64.3 70 45.7


User provided reference genes

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