Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 8.1e-143 510.4 254 100.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.5e-120 435.6 253 84.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.0e-116 423.7 253 82.6
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.1e-106 389.4 254 77.2
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.3e-105 386.0 254 76.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.3e-105 386.0 255 74.1
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.9e-105 385.2 254 75.2
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 8.7e-105 384.0 251 75.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.8e-103 379.0 248 75.8
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 4.8e-103 378.3 254 74.0
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.8e-103 378.3 254 72.8
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 4.1e-102 375.2 252 72.6
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.2e-101 373.6 254 72.0
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 2.0e-101 372.9 258 71.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.6e-101 372.5 254 74.4
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 3.8e-100 368.6 256 72.3
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 6.5e-100 367.9 254 72.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.4e-99 366.7 252 71.8
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.4e-99 366.7 254 71.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 4.2e-99 365.2 227 77.1
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 7.2e-99 364.4 254 71.3
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.2e-98 363.6 255 72.2
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.7e-98 362.5 257 70.4
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.7e-98 362.5 253 70.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.0e-97 360.5 242 72.3
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.4e-97 360.1 256 71.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.3e-97 359.4 255 71.0
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.0e-97 359.0 252 70.6
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.0e-97 359.0 252 70.6
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.9e-97 358.6 209 80.9
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.9e-97 358.6 254 68.5
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.9e-97 358.6 263 70.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.9e-97 358.6 252 70.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.9e-97 358.6 252 70.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.9e-97 358.6 252 70.6
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 3.9e-97 358.6 251 70.1
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 6.7e-97 357.8 239 73.6
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.1e-96 357.1 208 80.8
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-96 356.7 252 70.2
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.0e-96 356.3 225 74.7
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.0e-96 356.3 208 79.3
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 2.5e-96 355.9 229 73.8
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.3e-96 355.5 256 68.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.3e-96 355.5 244 71.7
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 7.4e-96 354.4 207 77.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 9.7e-96 354.0 256 68.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.8e-95 352.4 254 67.7
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.8e-95 352.4 254 68.5
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.7e-95 352.1 256 69.1
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 4.8e-95 351.7 255 68.2
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 4.8e-95 351.7 255 67.5
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 4.1e-94 348.6 261 67.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.1e-94 348.6 256 69.1
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 6.9e-94 347.8 254 67.7
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.9e-94 347.8 239 69.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.2e-93 347.1 268 67.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.0e-93 346.3 238 71.0
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.0e-93 346.3 258 69.4
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.0e-93 346.3 258 69.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.4e-93 345.5 239 68.2
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 4.5e-93 345.1 265 64.5
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.8e-92 342.0 207 76.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 5.0e-92 341.7 215 72.1
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 8.5e-92 340.9 248 67.7
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 8.5e-92 340.9 239 69.0
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 8.5e-92 340.9 239 69.5
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 8.5e-92 340.9 239 69.5
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 8.5e-92 340.9 255 65.5
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.4e-91 340.1 232 69.4
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.2e-91 339.0 254 63.8
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 3.2e-91 339.0 256 66.8
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 5.5e-91 338.2 230 69.1
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.2e-91 337.8 201 76.6
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 9.4e-91 337.4 211 74.4
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-90 336.7 249 65.5
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.6e-90 336.7 228 69.3
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.6e-90 336.7 254 66.1
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 3.6e-90 335.5 249 66.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.7e-90 335.1 244 66.4
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 6.1e-90 334.7 208 74.0
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 6.1e-90 334.7 251 64.5
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 6.1e-90 334.7 249 66.3
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.0e-89 334.0 203 75.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.8e-89 333.2 203 74.4
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.8e-89 333.2 248 65.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.8e-89 333.2 203 74.4
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 203 74.4
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 8.8e-89 330.9 255 65.5
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.0e-88 329.7 252 65.1
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.6e-88 329.3 250 64.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.3e-88 328.9 299 58.2
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 3.3e-88 328.9 254 65.4
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 9.7e-88 327.4 257 64.2
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.3e-87 327.0 254 69.3
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.8e-87 325.9 255 65.9
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 4.8e-87 325.1 226 69.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.4e-86 323.6 257 63.8
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.8e-86 323.2 199 72.9
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.6e-85 320.1 202 73.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.6e-85 319.3 202 72.8
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.9e-84 315.8 246 63.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 2.7e-82 309.3 257 59.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.0e-81 305.4 244 64.3
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 5.7e-80 301.6 172 80.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.7e-79 300.1 350 47.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 5.5e-75 285.0 204 63.7
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.7e-69 266.2 220 62.7
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 2.7e-69 266.2 309 50.2
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.2e-68 263.1 148 82.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.5e-67 259.6 136 89.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.1e-66 255.0 291 50.9
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 1.4e-62 243.8 226 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.1e-59 234.2 195 55.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.7e-56 221.9 145 70.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.4e-55 218.4 192 52.6
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-54 217.6 254 48.0
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 3.2e-54 216.1 247 48.2
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.9e-52 209.1 151 70.2
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.1e-51 207.6 119 82.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.7e-47 192.6 190 45.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.2e-46 189.5 154 59.1
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 2.7e-45 186.4 194 50.0
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.9e-44 182.6 106 80.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.3e-43 179.5 169 53.8
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.8e-41 173.7 100 83.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 3.1e-41 172.9 130 63.1
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.6e-40 169.9 100 82.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 5.8e-40 168.7 100 78.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.3e-36 157.5 97 74.2
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.5e-35 154.1 152 52.6
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-32 144.4 87 80.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.9e-30 137.1 84 70.2
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.7e-28 130.6 106 65.1
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-28 130.2 183 43.7
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 3.9e-28 129.4 128 53.1
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 4.4e-24 115.9 100 53.0
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.2e-23 113.6 184 32.6
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.4e-22 110.2 69 72.5
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 7.1e-22 108.6 72 69.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 7.1e-22 108.6 72 69.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 7.1e-22 108.6 72 69.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 7.1e-22 108.6 72 69.4
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 9.3e-22 108.2 102 56.9
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.7e-21 106.7 71 69.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.4e-17 94.4 111 55.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.8e-17 94.0 182 31.3
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 3.5e-13 79.7 117 30.8
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 7.9e-13 78.6 49 73.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.9e-12 76.3 55 61.8
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.9e-12 76.3 55 61.8
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.8e-10 70.1 54 50.0
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.1e-09 68.2 77 44.2
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.3e-09 65.9 55 58.2
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 5.3e-09 65.9 56 58.9
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 5.3e-09 65.9 42 73.8
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.5e-08 64.3 101 34.7
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 5.8e-08 62.4 90 45.6
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 5.8e-08 62.4 41 61.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 9.9e-08 61.6 35 77.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 9.9e-08 61.6 35 77.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 1.7e-07 60.8 40 67.5
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 2.4e-06 57.0 87 43.7


User provided reference genes

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