Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 0.0e+00 1224.5 623 100.0
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 6.3e-274 947.2 620 77.6
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 2.8e-253 878.6 601 75.4
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 3.5e-224 781.9 598 64.7
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 8.7e-223 777.3 666 63.7
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 1.9e-222 776.2 592 67.2
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 2.5e-222 775.8 625 64.0
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 3.4e-219 765.4 591 66.7
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 2.9e-218 762.3 623 63.9
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 8.4e-218 760.8 613 63.8
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 7.1e-217 757.7 622 60.5
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 3.0e-215 752.3 635 61.1
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 8.7e-215 750.7 619 61.9
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 2.8e-213 745.7 628 61.8
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 5.3e-212 741.5 614 63.2
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 6.9e-212 741.1 603 60.7
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 3.4e-211 738.8 619 59.5
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.7e-210 736.5 630 60.0
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 5.5e-209 731.5 604 60.8
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 7.9e-208 727.6 603 59.9
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 2.3e-207 726.1 600 61.7
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 9.7e-206 720.7 618 59.7
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 1.1e-204 717.2 594 61.8
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 5.3e-204 714.9 556 65.1
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 2.9e-202 709.1 610 60.5
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 3.8e-202 708.8 612 60.3
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 7.2e-201 704.5 619 59.5
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 6.1e-200 701.4 610 60.0
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 1.4e-199 700.3 587 60.1
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 6.3e-197 691.4 577 62.6
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 3.1e-196 689.1 609 59.4
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 1.5e-195 686.8 612 59.2
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.6e-195 686.0 593 61.7
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 4.2e-193 678.7 614 57.8
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 9.4e-193 677.6 661 55.1
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 9.4e-193 677.6 624 57.5
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 1.5e-190 670.2 619 57.4
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 8.2e-189 664.5 622 57.4
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.1e-188 664.1 626 55.4
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 9.1e-188 661.0 588 60.9
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 1.7e-186 656.8 552 62.7
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 3.8e-186 655.6 627 56.0
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 2.5e-185 652.9 648 54.2
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 9.4e-185 651.0 624 55.6
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 1.6e-184 650.2 595 57.8
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 6.7e-183 644.8 597 55.9
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.7e-182 641.7 619 54.3
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 1.3e-181 640.6 570 57.2
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 2.2e-181 639.8 597 56.4
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.1e-180 637.5 573 56.7
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.4e-180 636.3 570 56.5
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 5.3e-180 635.2 615 54.3
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 7.0e-180 634.8 600 54.5
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 2.7e-179 632.9 609 53.9
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 5.0e-178 628.6 579 55.8
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 8.5e-178 627.9 616 54.1
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 1.2e-176 624.0 610 53.3
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.2e-176 624.0 610 53.1
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 3.6e-176 622.5 582 55.2
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 8.0e-176 621.3 585 55.4
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 8.8e-175 617.8 621 53.0
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 4.8e-173 612.1 594 53.7
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 3.1e-172 609.4 598 53.3
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 4.5e-171 605.5 451 65.9
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 6.5e-170 601.7 627 52.2
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 2.0e-166 590.1 672 48.1
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 5.7e-166 588.6 569 55.2
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 9.8e-166 587.8 631 51.5
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 4.9e-165 585.5 605 52.4
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 1.1e-164 584.3 630 50.6
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 7.0e-164 581.6 624 49.0
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 2.7e-163 579.7 720 47.1
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 2.9e-162 576.2 569 53.8
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 1.9e-161 573.5 724 46.0
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 1.4e-156 557.4 643 49.1
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 1.0e-151 541.2 421 61.5
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 7.5e-150 535.0 421 62.7
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.4e-148 530.8 457 60.0
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 1.6e-144 517.3 458 58.1
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 3.6e-144 516.2 627 45.6
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 8.1e-144 515.0 432 62.3
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.3e-143 513.5 627 46.4
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 4.0e-143 512.7 452 58.6
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 6.8e-143 511.9 592 46.1
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 3.4e-142 509.6 597 48.1
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 4.9e-133 479.2 616 48.1
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 6.0e-131 472.2 455 56.3
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 1.3e-130 471.1 613 47.1
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 6.6e-130 468.8 597 44.4
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 9.9e-126 454.9 366 61.2
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 1.7e-125 454.1 411 58.2
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.2e-123 448.0 418 55.3
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 9.6e-121 438.3 590 43.4
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 1.6e-120 437.6 493 47.1
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 4.0e-119 433.0 390 58.5
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.3e-117 427.9 390 57.7
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 2.9e-117 426.8 598 43.1
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 2.8e-112 410.2 465 51.6
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.3e-97 359.8 638 37.3
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 2.4e-95 354.0 576 37.3
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 2.6e-94 350.5 649 36.8
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.8e-80 303.9 298 53.7
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 1.2e-65 255.4 598 30.3
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 7.2e-60 236.1 214 59.8
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 8.0e-59 232.6 233 51.1
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 3.5e-54 217.2 202 56.9
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.0e-45 189.1 266 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 4.7e-43 180.3 625 26.6
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 1.1e-34 152.5 258 36.4
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 1.3e-29 135.6 157 47.8
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 2.3e-29 134.8 212 36.8
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.5e-28 132.1 302 33.4
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 1.5e-20 105.5 147 47.6
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 8.4e-16 89.7 93 54.8
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 1.4e-15 89.0 372 25.8
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 9.2e-15 86.3 174 36.8
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.6e-14 84.0 77 62.3
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 2.3e-13 81.6 65 64.6
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 5.1e-13 80.5 79 53.2
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 1.1e-12 79.3 67 64.2
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 1.2e-11 75.9 46 73.9
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 1.2e-11 75.9 72 55.6
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 9.0e-10 69.7 76 51.3
CAN.G404.26 Capsicum annuum HOM05D006452 ORTHO05D008068 3.5e-06 57.8 61 42.6


User provided reference genes

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