Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 5.8e-52 207.6 132 100.0
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.2e-28 130.2 134 73.1
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 5.9e-28 127.9 128 73.4
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.3e-27 126.7 138 70.3
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.7e-27 126.3 133 71.4
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.2e-27 125.9 134 71.6
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 8.5e-27 124.0 134 70.9
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.4e-26 123.2 121 75.2
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 2.5e-26 122.5 132 72.7
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 2.5e-26 122.5 128 71.1
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 3.2e-26 122.1 132 72.7
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 2.3e-24 115.9 122 70.5
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 3.0e-24 115.5 128 73.4
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 3.9e-24 115.2 131 68.7
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.5e-23 113.2 137 65.0
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 1.3e-22 110.2 132 68.2
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 2.2e-22 109.4 134 67.2
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.2e-22 109.4 134 67.2
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.2e-22 109.4 134 67.2
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 2.8e-22 109.0 130 65.4
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 4.8e-22 108.2 157 61.8
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 8.2e-22 107.5 98 79.6
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.1e-21 107.1 102 73.5
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.8e-21 106.3 99 78.8
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 6.9e-21 104.4 136 63.2
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 6.9e-21 104.4 150 61.3
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 2.0e-20 102.8 129 68.2
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 4.5e-20 101.7 99 74.7
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 4.5e-20 101.7 99 74.7
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.0e-19 100.5 92 82.6
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.0e-19 100.5 92 82.6
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 1.0e-19 100.5 98 72.4
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.3e-19 100.1 132 64.4
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 1.7e-19 99.8 128 65.6
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 2.9e-19 99.0 105 76.2
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 5.0e-19 98.2 89 82.0
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 6.5e-19 97.8 92 81.5
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.1e-18 97.1 97 76.3
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.1e-18 97.1 100 75.0
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 1.9e-18 96.3 125 62.4
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 2.5e-18 95.9 82 84.1
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 3.2e-18 95.5 168 52.4
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 3.2e-18 95.5 98 75.5
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 3.2e-18 95.5 87 85.1
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 4.2e-18 95.1 92 80.4
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 4.2e-18 95.1 92 80.4
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 4.2e-18 95.1 135 60.7
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 5.5e-18 94.7 134 64.2
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.2e-17 93.6 97 75.3
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 1.2e-17 93.6 96 76.0
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 2.1e-17 92.8 120 69.2
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 3.6e-17 92.0 118 66.9
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 3.6e-17 92.0 118 68.6
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 4.7e-17 91.7 122 64.8
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 4.7e-17 91.7 82 80.5
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 1.0e-16 90.5 72 63.9
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 3.9e-16 88.6 98 73.5
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.7e-16 87.8 118 63.6
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 6.7e-16 87.8 131 58.8
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.5e-15 86.7 98 73.5
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.5e-15 86.7 109 69.7
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.5e-15 86.7 109 68.8
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 3.3e-15 85.5 110 68.2
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.3e-14 83.6 133 60.2
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.7e-14 83.2 116 65.5
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 1.7e-14 83.2 100 70.0
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 2.8e-14 82.4 109 66.1
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 2.8e-14 82.4 110 67.3
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 6.3e-14 81.3 104 68.3
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 8.2e-14 80.9 75 54.7
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 1.1e-13 80.5 65 61.5
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 4.1e-13 78.6 70 64.3
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 9.1e-13 77.4 116 61.2
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 1.2e-12 77.0 137 56.9
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 2.6e-12 75.9 79 79.7
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 1.7e-11 73.2 103 65.0
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 2.2e-11 72.8 113 60.2
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 2.2e-11 72.8 113 61.1
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 6.5e-11 71.2 115 60.9
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 1.5e-10 70.1 99 68.7
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 1.6e-09 66.6 68 55.9
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 1.6e-09 66.6 74 51.4
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.6e-09 66.6 41 75.6
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 6.1e-09 64.7 113 61.9
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.0e-08 63.9 97 39.2
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.0e-08 63.9 119 58.0
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.4e-08 63.5 39 69.2
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 6.7e-08 61.2 41 65.9
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 8.8e-08 60.8 47 57.4
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.2e-07 60.5 41 63.4
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 1.5e-07 60.1 42 61.9
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 9.7e-07 57.4 54 51.9
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 9.7e-07 57.4 34 67.6
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 9.7e-07 57.4 34 67.6
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 4.8e-06 55.1 39 59.0
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 4.8e-06 55.1 95 34.7
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 6.3e-06 54.7 40 57.5
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 8.2e-06 54.3 34 64.7
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 8.2e-06 54.3 34 64.7
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 8.2e-06 54.3 34 64.7
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 8.2e-06 54.3 34 64.7
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 8.2e-06 54.3 39 59.0


User provided reference genes

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