Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G053500 Carya illinoinensis HOM05D007185 ORTHO05D009016 8.8e-53 209.9 99 100.0
CiPaw.10G045100 Carya illinoinensis HOM05D007185 ORTHO05D009016 1.9e-39 165.6 94 84.0
Haze_06539 Corylus avellana HOM05D007185 ORTHO05D009016 6.8e-37 157.1 96 82.3
Cfa000387 Carpinus fangiana HOM05D007185 ORTHO05D009016 1.5e-36 156.0 95 82.1
Manes.17G041400 Manihot esculenta HOM05D007185 ORTHO05D009016 7.5e-28 127.1 92 66.3
Prupe.4G040400 Prunus persica HOM05D007185 ORTHO05D009016 8.3e-27 123.6 99 62.6
RcHm_v2.0_Chr5g0007481 Rosa chinensis HOM05D007185 ORTHO05D009016 1.8e-26 122.5 95 62.1
Manes.16G023500 Manihot esculenta HOM05D007185 ORTHO05D009016 9.2e-26 120.2 92 63.0
Thecc.06G194500 Theobroma cacao HOM05D007185 ORTHO05D009016 1.6e-25 119.4 92 60.9
Lj6g0018466 Lotus japonicus HOM05D007185 ORTHO05D009016 2.7e-25 118.6 99 57.6
Ciclev10017305m.g Citrus clementina HOM05D007185 ORTHO05D009016 7.8e-25 117.1 92 60.9
FvH4_6g14200 Fragaria vesca HOM05D007185 ORTHO05D009016 7.8e-25 117.1 96 61.5
FAN05G3455 Fragaria x ananassa HOM05D007185 ORTHO05D009016 7.8e-25 117.1 96 61.5
FAN14G1513 Fragaria x ananassa HOM05D007185 ORTHO05D009016 7.8e-25 117.1 96 61.5
MD05G1322400 Malus domestica HOM05D007185 ORTHO05D009016 7.8e-25 117.1 96 60.4
Potri.004G037500 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.0e-24 116.7 92 62.0
Ca_00300_v3 Cicer arietinum L. HOM05D007185 ORTHO05D009016 1.7e-24 115.9 96 59.4
FAN09G3112 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.3e-24 115.5 96 61.5
Psat1g206960 Pisum sativum HOM05D007185 ORTHO05D009016 8.6e-24 113.6 99 57.6
TPR.G36776 Trifolium pratense HOM05D007185 ORTHO05D009016 8.6e-24 113.6 99 58.6
Glyma.15G069900 Glycine max HOM05D007185 ORTHO05D009016 1.2e-22 109.8 92 62.0
COL.COLO4_31534 Corchorus olitorius HOM05D007185 ORTHO05D009016 1.6e-22 109.4 95 56.8
Medtr2g012800 Medicago truncatula HOM05D007185 ORTHO05D009016 1.6e-22 109.4 101 55.4
Sabra04G0022700 Salix brachista HOM05D007185 ORTHO05D009016 1.6e-22 109.4 92 56.5
Lalb_Chr15g0089951 Lupinus albus HOM05D007185 ORTHO05D009016 3.6e-22 108.2 100 55.0
Lalb_Chr18g0059811 Lupinus albus HOM05D007185 ORTHO05D009016 8.0e-22 107.1 94 55.3
Oeu053961.1 Olea europaea HOM05D007185 ORTHO05D009016 8.0e-22 107.1 90 61.1
Potri.011G046112 Populus trichocarpa HOM05D007185 ORTHO05D009016 1.1e-21 106.7 92 55.4
Glyma.13G243800 Glycine max HOM05D007185 ORTHO05D009016 1.8e-21 105.9 92 58.7
Phvul.006G189400 Phaseolus vulgaris HOM05D007185 ORTHO05D009016 4.0e-21 104.8 94 61.7
arahy.Tifrunner.gnm1.ann1.5HQW77 Arachis hypogaea HOM05D007185 ORTHO05D009016 5.2e-21 104.4 100 57.0
FAN25G2721 Fragaria x ananassa HOM05D007185 ORTHO05D009016 8.9e-21 103.6 92 57.6
Lalb_Chr20g0122101 Lupinus albus HOM05D007185 ORTHO05D009016 8.9e-21 103.6 101 55.4
arahy.Tifrunner.gnm1.ann1.D3DKTB Arachis hypogaea HOM05D007185 ORTHO05D009016 1.2e-20 103.2 100 56.0
Hma1.2p1_0835F.1_g225880 Hydrangea macrophylla HOM05D007185 ORTHO05D009016 1.2e-20 103.2 63 76.2
Actinidia05600 Actinidia chinensis HOM05D007185 ORTHO05D009016 1.5e-20 102.8 93 59.1
MELO3C002569.2 Cucumis melo HOM05D007185 ORTHO05D009016 2.0e-20 102.4 90 57.8
FAN21G1120 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.0e-20 102.4 92 57.6
Gohir.A05G163200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.6e-20 102.1 89 56.2
Gohir.D10G023700 Gossypium hirsutum HOM05D007185 ORTHO05D009016 7.5e-20 100.5 92 51.1
Gorai.011G024800 Gossypium raimondii HOM05D007185 ORTHO05D009016 7.5e-20 100.5 92 51.1
ClCG03G005660 Citrullus lanatus HOM05D007185 ORTHO05D009016 1.3e-19 99.8 89 56.2
CsaV3_1G011920 Cucumis sativus L. HOM05D007185 ORTHO05D009016 1.3e-19 99.8 90 55.6
Gohir.D05G166000 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.7e-19 99.4 89 56.2
Gorai.009G171200 Gossypium raimondii HOM05D007185 ORTHO05D009016 1.7e-19 99.4 89 56.2
FvH4_3g04560 Fragaria vesca HOM05D007185 ORTHO05D009016 2.2e-19 99.0 92 55.4
FAN11G2592 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.2e-19 99.0 92 55.4
FAN16G0756 Fragaria x ananassa HOM05D007185 ORTHO05D009016 2.2e-19 99.0 92 55.4
Nn1g03963 Nelumbo nucifera HOM05D007185 ORTHO05D009016 2.9e-19 98.6 92 52.2
ClCG01G022750 Citrullus lanatus HOM05D007185 ORTHO05D009016 6.4e-19 97.4 95 55.8
Atru.chr10.1968 Acer truncatum HOM05D007185 ORTHO05D009016 1.1e-18 96.7 105 50.5
Cpa.g.sc27.90 Carica papaya HOM05D007185 ORTHO05D009016 2.4e-18 95.5 90 55.6
Gohir.A10G022900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 7.0e-18 94.0 92 47.8
Gohir.A09G071400 Gossypium hirsutum HOM05D007185 ORTHO05D009016 1.2e-17 93.2 90 51.1
Gohir.1Z049398 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.0e-17 92.4 87 52.9
Gohir.D09G071200 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.0e-17 92.4 87 52.9
Gorai.006G086100 Gossypium raimondii HOM05D007185 ORTHO05D009016 2.0e-17 92.4 87 52.9
MELO3C007306.2 Cucumis melo HOM05D007185 ORTHO05D009016 3.5e-17 91.7 95 51.6
Sed0025622 Sechium edule HOM05D007185 ORTHO05D009016 7.8e-17 90.5 86 55.8
Aqoxy4G01278 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 1.0e-16 90.1 92 47.8
Sed0016146 Sechium edule HOM05D007185 ORTHO05D009016 1.3e-16 89.7 92 52.2
Aqoxy1G01214 Aquilegia oxysepala HOM05D007185 ORTHO05D009016 3.0e-16 88.6 94 45.7
Sabra11G0031900 Salix brachista HOM05D007185 ORTHO05D009016 8.6e-16 87.0 88 47.7
HanXRQChr09g0263951 Helianthus annuus HOM05D007185 ORTHO05D009016 3.3e-15 85.1 108 44.4
Sc17g0006400 Simmondsia chinensis HOM05D007185 ORTHO05D009016 7.3e-15 84.0 104 42.3
Sed0006501 Sechium edule HOM05D007185 ORTHO05D009016 9.5e-15 83.6 58 67.2
MBI18_g13206_MAGBIO Magnolia biondii HOM05D007185 ORTHO05D009016 2.1e-14 82.4 81 48.1
SGA_v2.0_scaffold22G09753 Striga asiatica HOM05D007185 ORTHO05D009016 2.3e-13 79.0 76 55.3
Lsat_1_v5_gn_7_20060 Lactuca sativa HOM05D007185 ORTHO05D009016 4.0e-13 78.2 67 59.7
EL10Ac8g20292 Beta vulgaris HOM05D007185 ORTHO05D009016 6.8e-13 77.4 63 61.9
Migut.H01502 Erythranthe guttata HOM05D007185 ORTHO05D009016 6.8e-13 77.4 98 46.9
Rhsim13G0175900 Rhododendron simsii HOM05D007185 ORTHO05D009016 6.8e-13 77.4 85 55.3
ATR0693G421 Amborella trichopoda HOM05D007185 ORTHO05D009016 2.0e-12 75.9 55 61.8
PGSC0003DMG400005083 Solanum tuberosum HOM05D007185 ORTHO05D009016 4.4e-12 74.7 90 53.3
Sopen03g002590 Solanum pennellii HOM05D007185 ORTHO05D009016 9.9e-12 73.6 91 50.5
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 8.3e-11 70.5 85 45.9
PSO210G6717 Papaver somniferum HOM05D007185 ORTHO05D009016 2.4e-10 68.9 77 53.2
unitig_26.g9366 Utricularia gibba HOM05D007185 ORTHO05D009016 2.4e-10 68.9 91 45.1
unitig_744.g24533 Utricularia gibba HOM05D007185 ORTHO05D009016 7.8e-09 63.9 88 39.8
Eucgr.E03362 Eucalyptus grandis HOM05D007185 ORTHO05D009016 1.7e-08 62.8 105 39.0
THA.LOC104819117 Tarenaya hassleriana HOM05D011034 ORTHO05D013144 1.7e-08 62.8 102 43.1
Potri.007G000801 Populus trichocarpa HOM05D007185 ORTHO05D009016 5.1e-08 61.2 44 59.1
unitig_21.g20222 Utricularia gibba HOM05D007185 ORTHO05D009016 6.6e-08 60.8 90 36.7
Ciclev10033499m.g Citrus clementina HOM05D007185 ORTHO05D009016 1.5e-07 59.7 44 59.1
Migut.M01165 Erythranthe guttata HOM05D007185 ORTHO05D009016 1.5e-07 59.7 68 48.5
DCAR_008059 Daucus carota HOM05D007185 ORTHO05D009016 9.5e-07 57.0 51 60.8
SHI02104 Sapria himalayana HOM05D007185 ORTHO05D009016 9.5e-07 57.0 72 44.4
Gorai.008G147600 Gossypium raimondii HOM05D007185 ORTHO05D009016 1.2e-06 56.6 44 54.5
QL01p000564 Quercus lobata HOM05D007185 ORTHO05D009016 1.6e-06 56.2 45 60.0
Gohir.A12G132900 Gossypium hirsutum HOM05D007185 ORTHO05D009016 2.1e-06 55.8 44 52.3
Manes.04G161900 Manihot esculenta HOM05D007185 ORTHO05D009016 2.8e-06 55.5 45 55.6
Thecc.02G153300 Theobroma cacao HOM05D007185 ORTHO05D009016 2.8e-06 55.5 44 54.5
vmacro03831 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 2.8e-06 55.5 57 57.9
Cpa.g.c35461 Carica papaya HOM05D007185 ORTHO05D009016 3.6e-06 55.1 46 54.3
Gohir.D12G136400 Gossypium hirsutum HOM05D007185 ORTHO05D009016 3.6e-06 55.1 44 52.3
TAR629G0868 Trochodendron aralioides HOM05D007185 ORTHO05D009016 3.6e-06 55.1 46 54.3
QL09p032521 Quercus lobata HOM05D007185 ORTHO05D009016 4.7e-06 54.7 46 56.5
Nn3g18559 Nelumbo nucifera HOM05D007185 ORTHO05D009016 8.1e-06 53.9 44 56.8


User provided reference genes

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