Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 9.8e-124 446.8 226 100.0
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 4.4e-84 315.1 238 74.4
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 2.9e-83 312.4 238 73.9
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.5e-76 290.0 219 71.2
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 7.6e-76 287.7 172 89.0
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.6e-68 262.7 237 63.3
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 7.1e-66 254.6 258 60.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.2e-65 253.8 252 61.9
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 6.0e-65 251.5 258 59.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 7.9e-65 251.1 246 59.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.9e-64 248.8 261 57.5
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.5e-63 246.1 246 61.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 9.6e-63 244.2 245 62.0
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.3e-62 243.8 266 56.4
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.6e-62 243.4 233 59.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.1e-62 243.0 237 63.7
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.1e-62 243.0 263 57.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.5e-60 236.9 244 54.1
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.5e-60 236.9 227 61.2
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.0e-60 236.5 233 63.9
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.4e-60 235.7 228 59.2
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 2.9e-59 232.6 261 57.5
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.1e-58 230.7 228 58.8
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 4.2e-58 228.8 238 59.7
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.2e-57 227.3 239 59.0
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 1.8e-56 223.4 243 58.0
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 1.9e-55 219.9 243 56.0
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 3.3e-55 219.2 228 58.8
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.7e-54 215.7 225 54.2
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 2.4e-53 213.0 244 57.4
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 4.1e-53 212.2 245 53.5
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.1e-53 212.2 249 54.2
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.5e-52 210.3 240 53.8
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.5e-52 210.3 259 56.8
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.6e-52 209.5 248 52.4
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 3.8e-51 205.7 235 55.3
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 8.4e-51 204.5 258 55.0
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 8.4e-51 204.5 260 53.1
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 4.2e-50 202.2 245 53.9
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 9.3e-50 201.1 246 54.1
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 4.6e-49 198.7 231 53.7
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.3e-48 197.2 255 51.4
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.3e-48 196.4 256 50.8
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 3.0e-48 196.1 244 51.6
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 8.7e-48 194.5 184 61.4
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.9e-47 193.4 255 50.2
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.5e-47 193.0 244 53.3
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.3e-46 190.7 232 51.3
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 8.2e-46 188.0 242 50.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.4e-45 186.4 229 52.0
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 3.1e-45 186.0 225 50.7
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.5e-44 183.7 281 46.6
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.5e-44 183.7 253 48.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.9e-44 181.8 228 52.6
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 5.9e-44 181.8 231 51.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.0e-43 181.0 248 48.8
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.0e-43 181.0 231 51.9
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-43 180.3 228 52.2
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-43 179.1 236 49.6
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.5e-43 178.3 236 50.8
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.9e-42 176.8 239 49.4
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.6e-41 173.7 224 50.4
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-41 173.7 230 49.6
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.7e-41 172.9 233 49.4
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.6e-41 172.6 227 49.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 7.9e-41 171.4 228 47.8
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.0e-40 171.0 244 48.0
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.0e-40 171.0 221 48.4
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-40 170.6 228 49.1
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-40 170.6 228 47.8
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 1.8e-40 170.2 225 48.0
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 3.0e-40 169.5 225 47.6
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 3.9e-40 169.1 240 48.8
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.3e-39 166.0 253 47.0
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.3e-39 165.6 240 48.3
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 5.7e-39 165.2 244 47.1
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 5.7e-39 165.2 244 47.1
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 7.4e-39 164.9 228 46.1
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.2e-38 163.3 265 44.2
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.2e-38 163.3 226 46.0
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 2.8e-38 162.9 234 51.3
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.7e-38 162.5 243 46.5
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 6.3e-38 161.8 238 48.7
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.1e-37 161.0 245 44.9
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.8e-37 160.2 228 47.8
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-37 160.2 245 44.5
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.8e-37 160.2 245 44.5
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.4e-37 159.8 226 45.1
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.1e-37 159.5 249 45.8
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.5e-36 157.1 253 45.1
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.0e-36 156.8 244 46.7
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 2.0e-36 156.8 241 44.0
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 2.6e-36 156.4 228 45.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.4e-36 156.0 223 48.9
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.4e-36 156.0 250 45.6
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.7e-35 153.7 240 42.9
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.7e-35 153.7 244 45.5
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 2.2e-35 153.3 238 45.0
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.8e-35 152.5 240 42.9
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.8e-35 152.5 240 42.9
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 1.1e-34 151.0 238 42.4
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.1e-34 151.0 247 41.3
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.4e-34 150.6 257 44.4
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.4e-34 150.6 242 43.0
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.9e-34 150.2 264 42.0
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.5e-34 149.8 251 43.0
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.5e-34 149.8 241 45.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-34 149.8 230 45.7
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 3.2e-34 149.4 241 45.2
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 3.2e-34 149.4 265 40.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 4.2e-34 149.1 240 44.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-33 147.5 263 41.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.6e-33 147.1 233 43.3
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-33 146.4 245 44.9
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-32 144.4 239 45.6
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.3e-32 143.3 244 42.2
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 3.9e-32 142.5 245 42.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 3.9e-32 142.5 245 42.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 3.9e-32 142.5 245 42.9
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 3.9e-32 142.5 239 42.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 5.1e-32 142.1 248 41.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-31 139.4 241 44.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 5.7e-31 138.7 232 43.1
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.7e-31 137.9 225 41.8
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.2e-30 136.7 182 54.9
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 8.2e-30 134.8 229 45.4
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.1e-29 134.4 228 41.7
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.2e-28 131.0 223 44.8
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.6e-28 130.6 229 41.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.6e-28 130.6 236 39.0
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.9e-28 128.6 228 41.2
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 3.2e-26 122.9 173 47.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.1e-25 120.2 224 43.3
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 3.6e-25 119.4 243 37.9
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 4.7e-25 119.0 193 45.6
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.0e-24 117.9 211 41.2
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.8e-24 117.1 131 56.5
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 3.0e-24 116.3 234 39.7
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 8.8e-24 114.8 229 42.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 5.7e-23 112.1 230 40.4
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.7e-22 110.5 236 38.1
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.7e-22 109.4 184 43.5
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 4.8e-22 109.0 163 46.6
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 4.8e-22 109.0 233 38.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 2.4e-21 106.7 240 37.1
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 3.1e-21 106.3 234 38.5
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 7.0e-21 105.1 185 42.7
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 2.7e-20 103.2 182 43.4
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.5e-18 96.7 129 48.8
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.2e-18 96.3 217 37.3
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.8e-16 90.5 217 33.6
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.0e-16 89.4 129 45.7
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.1e-13 79.3 155 42.6
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.3e-11 74.3 192 36.5
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.3e-11 74.3 203 34.0
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 2.2e-11 73.6 76 60.5
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 5.5e-10 68.9 167 37.7
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 9.4e-10 68.2 141 38.3
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.1e-09 67.0 79 49.4
Nn1g03499 Nelumbo nucifera HOM05D004369 ORTHO05D004907 1.4e-08 64.3 88 48.9
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 2.0e-07 60.5 106 39.6
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 4.4e-07 59.3 93 45.2
Os03g0320600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 2.2e-06 57.0 159 32.7


User provided reference genes

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