Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 5.3e-29 130.2 59 100.0
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.2e-17 92.4 51 82.4
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.6e-17 92.0 58 75.9
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 1.4e-16 89.0 60 75.0
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.1e-15 85.9 58 74.1
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 3.7e-14 80.9 59 72.9
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 6.3e-14 80.1 58 70.7
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 8.2e-14 79.7 60 66.7
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 1.1e-13 79.3 59 67.8
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 1.4e-13 79.0 60 66.7
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 2.4e-13 78.2 60 75.0
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 2.4e-13 78.2 58 65.5
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 3.1e-13 77.8 56 71.4
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 3.1e-13 77.8 58 70.7
Eucgr.K01615 Eucalyptus grandis HOM05D008152 ORTHO05D010231 6.9e-13 76.6 62 62.9
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 9.1e-13 76.3 55 67.3
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 1.2e-12 75.9 58 69.0
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 1.5e-12 75.5 56 67.9
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 2.0e-12 75.1 60 71.7
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 2.0e-12 75.1 60 71.7
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 2.6e-12 74.7 56 66.1
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 3.4e-12 74.3 58 67.2
Oeu013028.1 Olea europaea HOM05D008152 ORTHO05D010231 5.9e-12 73.6 56 67.9
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 7.7e-12 73.2 59 62.7
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 7.7e-12 73.2 59 62.7
Glyma.19G131100 Glycine max HOM05D008152 ORTHO05D010231 1.0e-11 72.8 56 64.3
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 1.7e-11 72.0 58 63.8
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 5.0e-11 70.5 65 53.8
Lj1g0004562 Lotus japonicus HOM05D008152 ORTHO05D010231 5.0e-11 70.5 56 67.9
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 5.0e-11 70.5 61 59.0
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 6.5e-11 70.1 54 64.8
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 1.1e-10 69.3 58 62.1
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 2.5e-10 68.2 48 70.8
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 5.5e-10 67.0 44 68.2
SalBow6G4146 Salvia bowleyana HOM05D008152 ORTHO05D010231 5.5e-10 67.0 55 69.1
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 1.6e-09 65.5 58 56.9
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 2.7e-09 64.7 58 58.6
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 4.7e-09 63.9 59 59.3
Sc13g0001370 Simmondsia chinensis HOM05D008152 ORTHO05D010231 4.7e-09 63.9 50 58.0
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 6.1e-09 63.5 41 65.9
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 2.3e-08 61.6 58 55.2
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 2.3e-08 61.6 58 55.2
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 2.3e-08 61.6 58 56.9
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 3.0e-08 61.2 58 55.2
Hund19113 Selenicereus undatus HOM05D008152 ORTHO05D010231 3.9e-08 60.8 57 57.9
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 3.9e-08 60.8 61 54.1
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 8.8e-08 59.7 58 53.4
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 1.5e-07 58.9 59 49.2
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 1.5e-07 58.9 60 46.7
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 2.6e-07 58.2 59 54.2
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 3.3e-07 57.8 59 55.9
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 4.4e-07 57.4 59 50.8
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 4.4e-07 57.4 59 50.8
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 9.7e-07 56.2 61 50.8
Sed0007854 Sechium edule HOM05D008152 ORTHO05D010231 9.7e-07 56.2 56 51.8
Thecc.10G170800 Theobroma cacao HOM05D018277 ORTHO05D020787 9.7e-07 56.2 34 67.6
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 3.7e-06 54.3 43 55.8
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 4.8e-06 53.9 66 48.5
Gohir.A10G182400 Gossypium hirsutum HOM05D018277 ORTHO05D020787 6.3e-06 53.5 50 50.0
Gohir.D10G189100 Gossypium hirsutum HOM05D018277 ORTHO05D020787 6.3e-06 53.5 50 50.0
Gorai.011G212400 Gossypium raimondii HOM05D018277 ORTHO05D020787 6.3e-06 53.5 50 50.0
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 8.2e-06 53.1 42 54.8


User provided reference genes

Program Settings