Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 0.0e+00 1479.5 776 100.0
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 1.7e-191 673.7 921 49.8
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 9.9e-176 621.3 790 52.8
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 9.4e-142 508.4 1096 37.7
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 1.7e-103 381.3 798 40.2
Haze_19794 Corylus avellana HOM05D007911 ORTHO05D009536 1.6e-101 374.8 514 51.2
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 1.8e-100 371.3 776 38.5
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 6.8e-100 369.4 764 38.9
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 6.2e-85 319.7 800 36.9
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 8.7e-79 299.3 774 35.1
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 5.6e-78 296.6 797 35.4
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.6e-77 293.9 757 34.1
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 2.9e-74 284.3 800 34.5
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 7.1e-73 279.6 804 34.0
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 4.6e-72 276.9 759 34.5
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.1e-68 265.8 1068 28.5
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 4.9e-58 230.3 694 33.6
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 4.2e-57 227.3 801 31.1
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 2.5e-54 218.0 925 29.9
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 6.0e-48 196.8 860 29.5
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 3.7e-45 187.6 792 30.1
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 4.1e-44 184.1 825 28.7
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 1.0e-42 179.5 320 40.3
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 5.0e-42 177.2 299 41.8
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 6.5e-42 176.8 793 27.9
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 4.2e-41 174.1 798 28.6
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 5.1e-39 167.2 133 62.4
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 7.4e-38 163.3 830 27.5
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 2.2e-37 161.8 222 47.7
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 6.3e-37 160.2 230 42.2
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.8e-36 158.7 808 28.0
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 2.4e-36 158.3 808 27.6
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.0e-35 155.2 133 60.2
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 1.3e-34 152.5 148 51.4
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 2.2e-34 151.8 764 26.8
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 2.9e-34 151.4 783 25.5
QL07p005404 Quercus lobata HOM05D007911 ORTHO05D009536 2.9e-34 151.4 280 44.6
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 6.5e-34 150.2 774 27.6
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.4e-33 149.1 636 28.0
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.5e-33 147.1 804 26.7
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 2.3e-31 141.7 262 40.8
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 6.7e-31 140.2 786 26.6
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 6.7e-31 140.2 800 27.5
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 6.7e-31 140.2 263 36.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.0e-30 138.7 311 35.4
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.8e-29 134.8 222 40.1
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 1.8e-28 132.1 149 49.0
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.8e-28 132.1 264 39.4
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 5.3e-28 130.6 495 29.9
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 5.3e-28 130.6 161 46.0
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 2.6e-27 128.3 772 25.4
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 2.6e-27 128.3 279 35.1
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 4.5e-27 127.5 794 26.2
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.7e-26 125.6 108 56.5
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 3.8e-26 124.4 774 26.6
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 2.7e-24 118.2 218 36.7
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.8e-23 113.2 790 25.1
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 1.5e-22 112.5 241 33.6
Atru.chr1.1237 Acer truncatum HOM05D007911 ORTHO05D009536 2.6e-22 111.7 353 32.0
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 7.4e-22 110.2 120 47.5
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 3.1e-20 104.8 134 43.3
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 5.3e-20 104.0 205 35.1
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 7.0e-20 103.6 732 25.3
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 9.1e-20 103.2 205 37.1
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 3.5e-19 101.3 96 53.1
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 3.5e-19 101.3 139 42.4
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 3.5e-19 101.3 125 40.8
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 2.5e-17 95.1 367 26.4
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.2e-16 92.8 112 44.6
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.6e-16 92.4 139 41.7
Ciclev10004930m.g Citrus clementina HOM05D007911 ORTHO05D044634 3.6e-16 91.3 237 31.6
Duzib106G0470 Durio zibethinus HOM05D007911 ORTHO05D009536 3.6e-16 91.3 217 39.2
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 6.1e-16 90.5 309 27.8
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 8.0e-16 90.1 368 25.8
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 2.3e-15 88.6 97 43.3
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 2.3e-15 88.6 119 43.7
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 5.2e-15 87.4 443 25.7
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 5.2e-15 87.4 113 41.6
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 9.7e-14 83.2 348 27.0
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.7e-13 82.4 232 31.9
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 2.2e-13 82.0 369 25.2
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 2.8e-13 81.6 771 23.7
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.8e-12 79.0 324 28.4
Ciclev10005612m.g Citrus clementina HOM05D007911 ORTHO05D044634 2.2e-10 72.0 219 30.1
Lalb_Chr25g0287301 Lupinus albus HOM05D007911 ORTHO05D009536 2.9e-10 71.6 165 37.0
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 2.9e-10 71.6 215 28.8
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.8e-10 71.2 215 28.4
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 1.1e-09 69.7 305 26.2
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 1.5e-09 69.3 125 35.2
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 4.2e-09 67.8 133 34.6
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 1.2e-08 66.2 453 24.9
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 1.2e-08 66.2 85 43.5
GSVIVG01033236001 Vitis vinifera HOM05D007911 ORTHO05D009536 1.6e-08 65.9 201 32.8
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 4.7e-08 64.3 113 38.1
THA.LOC104804815 Tarenaya hassleriana HOM05D012091 ORTHO05D013971 4.0e-07 61.2 283 29.0
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 4.4e-06 57.8 298 25.2
FAN02G4422 Fragaria x ananassa HOM05D020102 ORTHO05D009536 5.7e-06 57.4 509 24.0


User provided reference genes

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