Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 5.1e-38 160.6 82 100.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.5e-13 79.3 84 51.2
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.8e-12 75.1 65 58.5
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 3.7e-12 74.7 79 53.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 6.2e-12 73.9 35 88.6
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.4e-11 72.0 82 50.0
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.4e-11 72.0 70 52.9
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.1e-11 71.6 80 52.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.3e-11 70.9 85 48.2
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 6.9e-11 70.5 56 62.5
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.9e-11 70.5 85 49.4
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 6.9e-11 70.5 87 46.0
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 9.0e-11 70.1 35 80.0
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 9.0e-11 70.1 85 48.2
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.2e-10 69.7 66 54.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.5e-10 69.3 44 70.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.5e-10 69.3 32 87.5
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.0e-10 68.9 47 66.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.0e-10 68.9 43 72.1
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 2.6e-10 68.6 32 87.5
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.4e-10 68.2 85 42.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.4e-10 68.2 88 44.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 3.4e-10 68.2 60 56.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.4e-10 68.2 89 49.4
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 4.5e-10 67.8 32 84.4
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 4.5e-10 67.8 32 84.4
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.5e-10 67.8 36 77.8
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 5.8e-10 67.4 48 64.6
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.8e-10 67.4 35 80.0
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 5.8e-10 67.4 52 63.5
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 5.8e-10 67.4 32 84.4
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 5.8e-10 67.4 32 81.2
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 5.8e-10 67.4 51 60.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.8e-10 67.4 47 63.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 5.8e-10 67.4 53 66.0
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.6e-10 67.0 33 84.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 7.6e-10 67.0 35 80.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.6e-10 67.0 71 46.5
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-09 66.6 36 75.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.0e-09 66.6 36 75.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.0e-09 66.6 36 75.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.0e-09 66.6 71 46.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.0e-09 66.6 71 46.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.0e-09 66.6 90 43.3
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-09 66.2 52 61.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-09 66.2 48 60.4
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.7e-09 65.9 32 81.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-09 65.9 47 63.8
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-09 65.9 47 63.8
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.7e-09 65.9 47 63.8
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.7e-09 65.9 47 63.8
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.7e-09 65.9 57 57.9
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.7e-09 65.9 52 59.6
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.7e-09 65.9 73 47.9
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.7e-09 65.9 31 83.9
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-09 65.9 72 45.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.7e-09 65.9 52 59.6
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-09 65.5 87 43.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.2e-09 65.5 31 87.1
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-09 65.5 43 67.4
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-09 65.5 43 67.4
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.2e-09 65.5 35 71.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 2.2e-09 65.5 35 71.4
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.9e-09 65.1 31 83.9
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.9e-09 65.1 43 65.1
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.9e-09 65.1 31 80.6
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.9e-09 65.1 70 51.4
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 2.9e-09 65.1 54 57.4
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.9e-09 65.1 32 81.2
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 3.8e-09 64.7 60 55.0
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-09 64.7 59 52.5
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-09 64.7 35 71.4
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.8e-09 64.7 35 71.4
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.8e-09 64.7 77 45.5
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.8e-09 64.7 31 90.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 5.0e-09 64.3 30 86.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 5.0e-09 64.3 49 59.2
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 6.5e-09 63.9 32 81.2
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.5e-09 63.9 32 78.1
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 8.4e-09 63.5 33 78.8
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.1e-08 63.2 48 58.3
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 34 76.5
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 34 76.5
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 34 76.5
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.4e-08 62.8 48 60.4
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 83.3
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 35 74.3
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-08 62.4 78 44.9
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.9e-08 62.4 44 61.4
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 80.0
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.5e-08 62.0 36 72.2
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.5e-08 62.0 68 45.6
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.5e-08 62.0 32 71.9
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.2e-08 61.6 38 68.4
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.2e-08 61.6 89 40.4
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.2e-08 61.6 29 86.2
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.2e-08 61.6 66 48.5
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 83.3
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 4.2e-08 61.2 36 72.2
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 4.2e-08 61.2 71 47.9
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.2e-08 61.2 59 49.2
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.2e-08 61.2 59 49.2
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.2e-08 61.2 51 58.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.2e-08 61.2 58 50.0
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.2e-08 61.2 30 83.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 5.5e-08 60.8 36 72.2
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 7.1e-08 60.5 29 86.2
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.1e-08 60.5 30 76.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.1e-08 60.5 36 69.4
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 7.1e-08 60.5 36 69.4
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 9.3e-08 60.1 58 55.2
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.3e-08 60.1 28 89.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.3e-08 60.1 30 76.7
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 9.3e-08 60.1 50 58.0
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 9.3e-08 60.1 70 41.4
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.2e-07 59.7 27 92.6
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.2e-07 59.7 85 43.5
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.2e-07 59.7 80 43.8
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-07 59.3 31 77.4
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-07 59.3 50 52.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.1e-07 58.9 32 71.9
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.1e-07 58.9 29 79.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 76.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.7e-07 58.5 35 65.7
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 36 63.9
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 2.7e-07 58.5 86 39.5
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.5e-07 58.2 35 68.6
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-07 58.2 54 50.0
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-07 58.2 54 50.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-07 58.2 41 61.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.5e-07 58.2 86 44.2
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.6e-07 57.8 28 82.1
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 6.1e-07 57.4 55 56.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 6.1e-07 57.4 28 82.1
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 6.1e-07 57.4 64 46.9
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.1e-07 57.4 36 72.2
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 6.1e-07 57.4 27 85.2
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 78.6
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 82.1
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 82.1
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 82.1
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 78.6
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.9e-07 57.0 87 41.4
RcHm_v2.0_Chr1g0317121 Rosa chinensis HOM05D021847 ORTHO05D025587 7.9e-07 57.0 30 83.3
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 7.9e-07 57.0 29 79.3
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 7.9e-07 57.0 28 82.1
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.0e-06 56.6 28 82.1
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.3e-06 56.2 28 78.6
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-06 56.2 28 78.6
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 1.3e-06 56.2 29 79.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.3e-06 56.2 29 79.3
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 73.3
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.3e-06 56.2 28 78.6
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.8e-06 55.8 28 78.6
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 1.8e-06 55.8 48 56.2
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.8e-06 55.8 29 79.3
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.8e-06 55.8 38 63.2
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.8e-06 55.8 60 53.3
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 2.3e-06 55.5 79 43.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 2.3e-06 55.5 50 54.0
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 3.9e-06 54.7 79 45.6
FAN01G0848 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.1e-06 54.3 31 74.2
FAN03G3154 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.1e-06 54.3 31 74.2
FAN06G2251 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.1e-06 54.3 31 74.2
FAN10G1859 Fragaria x ananassa HOM05D021847 ORTHO05D025587 5.1e-06 54.3 31 74.2
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 5.1e-06 54.3 46 52.2
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 5.1e-06 54.3 44 61.4
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 6.7e-06 53.9 47 53.2
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 8.7e-06 53.5 52 61.5
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 8.7e-06 53.5 49 51.0
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 8.7e-06 53.5 52 50.0


User provided reference genes

Program Settings