Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.8e-66 256.5 223 100.0
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.3e-40 170.6 223 74.9
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 3.3e-39 166.0 221 75.1
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 4.3e-39 165.6 221 75.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-37 161.0 223 74.4
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 4.9e-35 152.1 223 74.9
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 4.9e-35 152.1 228 71.9
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.1e-34 151.0 223 74.4
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.2e-34 149.4 217 74.2
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.2e-34 149.1 224 71.4
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.5e-33 146.0 224 71.4
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.0e-32 144.4 215 73.0
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.3e-32 144.1 137 62.8
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 3.0e-32 142.9 236 68.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.0e-32 142.9 224 72.3
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.9e-32 142.5 225 71.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 5.1e-32 142.1 232 68.1
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 6.6e-32 141.7 224 70.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-31 141.0 215 66.5
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-31 141.0 214 68.7
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.5e-31 140.6 217 69.1
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.9e-31 140.2 215 73.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.9e-31 140.2 213 73.2
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.3e-31 139.0 140 60.7
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 5.6e-31 138.7 220 71.8
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 5.6e-31 138.7 229 70.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 5.6e-31 138.7 223 71.7
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 7.3e-31 138.3 223 67.3
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.3e-30 137.5 221 71.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.3e-30 137.5 229 65.1
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.8e-30 136.3 233 65.7
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.8e-30 135.6 218 54.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.2e-30 135.2 143 62.2
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 6.2e-30 135.2 228 67.1
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.2e-30 135.2 213 70.4
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.1e-30 134.8 219 73.1
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.1e-29 134.4 220 70.5
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 1.1e-29 134.4 215 66.5
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-29 134.0 216 71.3
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.8e-29 133.7 237 70.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.8e-29 133.7 227 68.3
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.8e-29 133.7 220 67.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.0e-29 132.5 236 70.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.3e-29 132.1 218 67.4
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 9.0e-29 131.3 216 69.4
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-28 131.0 220 55.0
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 1.5e-28 130.6 231 71.4
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-28 130.6 231 71.4
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 2.0e-28 130.2 140 60.0
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.0e-28 130.2 233 69.5
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.0e-28 130.2 221 69.2
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 2.0e-28 130.2 221 69.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.6e-28 129.8 233 69.5
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.6e-28 129.8 221 68.8
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.5e-28 129.0 233 69.1
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 4.5e-28 129.0 137 56.2
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 4.5e-28 129.0 223 72.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.8e-28 128.6 218 56.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 5.8e-28 128.6 232 72.4
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.8e-28 128.6 228 67.5
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.8e-28 128.6 228 67.5
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 5.8e-28 128.6 219 66.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 5.8e-28 128.6 232 69.0
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 7.6e-28 128.3 221 69.2
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 7.6e-28 128.3 239 63.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.6e-28 128.3 224 70.5
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 9.9e-28 127.9 234 71.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-27 127.5 138 61.6
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.7e-27 127.1 228 73.2
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.2e-27 126.7 132 56.8
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.9e-27 126.3 226 67.7
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.9e-27 126.3 223 73.5
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 3.8e-27 125.9 222 71.2
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 4.9e-27 125.6 232 70.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.4e-27 125.2 213 70.9
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.1e-26 124.4 239 69.9
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.1e-26 124.4 218 65.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.4e-26 123.2 240 69.6
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 3.2e-26 122.9 227 65.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 4.2e-26 122.5 224 70.1
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.4e-26 122.1 224 65.2
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 7.1e-26 121.7 241 68.5
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 7.1e-26 121.7 241 68.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 9.3e-26 121.3 147 56.5
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.1e-25 120.2 230 70.9
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 2.7e-25 119.8 213 70.9
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.7e-25 119.8 218 74.8
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 3.5e-25 119.4 176 73.3
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.0e-24 117.9 219 68.9
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.0e-24 117.9 215 62.8
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.3e-24 117.5 219 67.6
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.3e-24 117.5 216 67.1
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.3e-24 117.5 221 67.9
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 2.3e-24 116.7 223 65.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 3.0e-24 116.3 224 65.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.1e-24 115.5 224 65.2
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 5.1e-24 115.5 225 72.4
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 6.7e-24 115.2 230 64.3
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 6.7e-24 115.2 230 66.5
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 8.7e-24 114.8 231 64.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.9e-23 113.6 216 66.7
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 3.3e-23 112.8 226 62.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.3e-23 112.5 235 63.4
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.3e-23 112.5 164 82.3
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.3e-23 112.5 225 67.1
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.3e-22 110.9 135 52.6
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.3e-22 110.9 190 74.7
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.6e-22 110.5 145 60.7
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.8e-22 109.8 214 66.4
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.6e-22 109.4 229 62.9
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 6.2e-22 108.6 229 62.9
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 6.2e-22 108.6 251 57.8
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 8.1e-22 108.2 212 40.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.1e-21 107.8 129 62.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.1e-21 107.8 216 67.1
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.4e-21 107.5 134 58.2
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.8e-21 107.1 221 64.3
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 2.4e-21 106.7 219 61.6
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.9e-21 105.1 236 69.1
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.2e-20 104.4 213 48.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.6e-20 103.2 139 51.8
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 4.5e-20 102.4 232 60.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 4.5e-20 102.4 232 60.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 4.5e-20 102.4 232 60.3
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 5.8e-20 102.1 265 59.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 5.8e-20 102.1 219 59.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 5.8e-20 102.1 219 59.4
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 5.8e-20 102.1 213 51.6
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 7.6e-20 101.7 219 52.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 9.9e-20 101.3 232 60.8
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 9.9e-20 101.3 233 64.4
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.3e-19 100.9 219 64.8
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 2.2e-19 100.1 219 50.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 2.2e-19 100.1 219 50.7
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.9e-19 99.8 223 50.2
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.9e-19 99.8 130 48.5
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 3.8e-19 99.4 231 61.5
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.1e-18 97.8 135 61.5
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 3.2e-18 96.3 168 39.9
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 5.5e-18 95.5 234 60.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 9.3e-18 94.7 224 45.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 1.6e-17 94.0 219 61.2
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.1e-17 93.6 232 57.8
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.5e-17 92.8 221 62.4
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.6e-17 92.4 240 40.8
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.3e-16 90.9 215 56.7
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.0e-16 89.7 218 56.9
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.5e-15 86.7 223 61.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.8e-14 83.2 131 44.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.8e-13 80.5 235 54.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.8e-13 80.5 135 38.5
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 5.3e-13 79.0 122 89.3
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.5e-12 77.4 127 40.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.5e-12 77.4 236 54.2
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 2.0e-12 77.0 141 44.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.6e-12 76.6 218 57.8
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 3.4e-12 76.3 215 62.8
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 3.8e-11 72.8 145 47.6
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.1e-10 71.2 221 51.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.5e-10 70.1 223 44.4
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 7.1e-10 68.6 38 84.2
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 3.0e-08 63.2 136 71.3
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 2.5e-07 60.1 38 73.7
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 2.5e-07 60.1 117 84.6
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 4.3e-07 59.3 82 46.3
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.3e-06 57.8 213 56.3


User provided reference genes

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