Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.3e-63 245.4 118 100.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.3e-55 219.5 119 89.1
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 3.4e-51 204.9 121 81.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 9.8e-51 203.4 121 81.8
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 6.6e-47 190.7 114 78.1
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 8.6e-47 190.3 113 78.8
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 8.6e-47 190.3 119 79.0
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 8.6e-47 190.3 118 78.8
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.3e-46 188.3 115 81.7
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 3.3e-46 188.3 113 81.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 4.3e-46 188.0 109 79.8
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 5.6e-46 187.6 116 77.6
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.3e-46 187.2 109 81.7
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.6e-45 186.0 109 80.7
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.8e-45 185.3 109 81.7
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.6e-45 184.9 115 80.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.7e-45 184.5 114 78.9
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.7e-45 184.5 117 76.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-44 183.0 109 78.9
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.8e-44 182.6 111 75.7
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 6.8e-44 180.6 115 74.8
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.2e-43 179.9 114 79.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.6e-43 178.7 117 72.6
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 7.5e-43 177.2 119 73.9
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.8e-43 176.8 107 76.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.8e-43 176.8 107 76.6
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.3e-42 176.4 116 75.9
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-42 176.0 114 72.8
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 2.2e-42 175.6 109 77.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.2e-42 175.6 118 70.3
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.2e-42 175.6 111 79.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.2e-42 175.6 111 79.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.9e-42 175.3 111 73.0
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.9e-42 174.5 118 72.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 6.4e-42 174.1 112 74.1
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 6.4e-42 174.1 106 79.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 8.3e-42 173.7 106 79.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.1e-41 173.3 107 77.6
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.1e-41 173.3 110 73.6
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 1.4e-41 172.9 107 75.7
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.4e-41 172.9 118 73.7
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.9e-41 172.6 115 72.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 72.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.4e-41 172.2 109 75.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.4e-41 172.2 106 73.6
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.2e-41 171.8 95 82.1
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 3.2e-41 171.8 101 79.2
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.1e-41 171.4 106 78.3
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 5.4e-41 171.0 104 76.9
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.4e-41 171.0 111 79.3
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 9.2e-41 170.2 110 72.7
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.2e-40 169.9 114 71.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 4.6e-40 167.9 118 71.2
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.6e-40 167.9 105 74.3
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 4.6e-40 167.9 110 71.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 4.6e-40 167.9 118 70.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.6e-40 167.9 106 75.5
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 4.6e-40 167.9 113 71.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 6.0e-40 167.5 107 75.7
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.8e-40 167.2 110 70.9
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-39 166.8 113 70.8
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.3e-39 166.4 111 70.3
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.7e-39 166.0 118 66.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.7e-39 166.0 118 69.5
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.3e-39 165.6 115 67.8
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 108 71.3
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 114 69.3
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.3e-39 165.6 115 66.1
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 3.0e-39 165.2 118 66.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.0e-39 165.2 101 76.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.1e-39 164.5 99 77.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 67.0
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 67.0
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 67.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 5.1e-39 164.5 110 70.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 6.6e-39 164.1 118 66.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.6e-39 164.1 118 66.9
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 8.6e-39 163.7 116 68.1
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.1e-38 163.3 110 70.0
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 107 72.0
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 107 72.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.5e-38 162.9 97 78.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 111 68.5
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.9e-38 162.5 118 66.9
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 115 67.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.9e-38 162.5 101 74.3
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.5e-38 162.2 116 68.1
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.3e-38 161.4 116 68.1
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.3e-38 161.4 118 66.1
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.3e-38 161.4 113 70.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 5.6e-38 161.0 118 67.8
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 5.6e-38 161.0 120 65.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 5.6e-38 161.0 120 65.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 5.6e-38 161.0 109 70.6
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.6e-38 161.0 118 68.6
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 7.3e-38 160.6 118 66.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 7.3e-38 160.6 106 70.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 7.3e-38 160.6 106 70.8
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 7.3e-38 160.6 102 75.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 118 65.3
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.2e-37 159.8 118 65.3
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.2e-37 159.8 109 69.7
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.6e-37 159.5 115 64.3
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.1e-37 159.1 118 66.9
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 111 68.5
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.6e-37 158.3 113 66.4
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 3.6e-37 158.3 106 69.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 4.7e-37 157.9 99 75.8
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 4.7e-37 157.9 121 66.1
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 8.1e-37 157.1 110 68.2
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.1e-36 156.8 115 66.1
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-36 156.8 101 73.3
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.1e-36 156.8 104 70.2
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.1e-36 156.8 111 68.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.1e-36 156.8 118 66.9
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 103 71.8
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.3e-36 155.6 104 69.2
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 2.3e-36 155.6 104 69.2
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-36 155.6 103 70.9
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.1e-36 155.2 103 71.8
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.1e-36 155.2 118 66.1
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.1e-36 155.2 118 66.1
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.0e-36 154.8 101 72.3
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 4.0e-36 154.8 108 67.6
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 101 73.3
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.5e-35 152.9 118 63.6
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 108 71.3
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 5.8e-35 151.0 83 81.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 7.6e-35 150.6 95 70.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.2e-34 149.1 105 70.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 8.4e-34 147.1 85 77.6
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 8.4e-34 147.1 105 64.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 118 61.9
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.9e-33 146.0 118 61.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.2e-33 143.7 118 60.2
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.7e-32 142.1 107 65.4
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 7.8e-32 140.6 96 66.7
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.1e-30 136.7 115 59.1
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.1e-30 136.7 82 74.4
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.7e-29 131.3 103 61.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.0e-28 128.3 103 61.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-24 115.9 60 86.7
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.7e-23 112.8 86 61.6
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.6e-21 105.1 81 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.1e-20 103.6 69 65.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 5.8e-19 97.8 105 50.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 9.9e-19 97.1 99 48.5
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.8e-18 95.1 61 77.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.2e-17 92.0 64 65.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.7e-16 89.0 112 46.4
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.1e-14 83.6 73 49.3
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.3e-14 82.0 71 50.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.8e-13 79.0 69 60.9
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 5.8e-11 71.2 64 51.6
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 7.1e-09 64.3 57 56.1
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 3.0e-07 58.9 42 66.7
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.6e-06 54.7 108 38.0


User provided reference genes

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