Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 5.7e-133 477.6 247 100.0
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-83 313.9 259 69.9
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.3e-72 274.6 259 62.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 6.1e-71 271.6 259 62.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.0e-69 266.5 259 62.5
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.7e-68 262.3 278 58.3
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.2e-67 259.2 259 60.2
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.3e-64 249.2 278 57.6
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.4e-61 238.8 265 58.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.4e-59 233.0 265 56.2
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.7e-57 226.9 267 53.9
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.3e-54 216.5 269 54.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.3e-54 216.5 262 52.7
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.6e-53 213.0 269 53.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.7e-52 210.3 269 53.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 8.4e-52 208.0 281 49.5
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.4e-51 207.2 255 53.7
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.1e-51 205.7 257 52.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.1e-50 203.4 268 48.9
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.1e-50 203.4 263 51.3
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 6.0e-50 201.8 265 50.9
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 6.0e-50 201.8 245 55.5
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.0e-49 201.1 260 50.0
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.3e-49 200.7 260 50.8
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.7e-49 200.3 263 51.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.3e-49 199.9 292 51.4
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.9e-49 199.1 261 50.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 8.6e-49 198.0 265 48.7
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.6e-49 198.0 258 50.4
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.5e-48 197.2 267 49.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.5e-48 197.2 258 51.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.9e-48 196.8 266 51.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.5e-48 196.4 158 69.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 2.5e-48 196.4 265 52.5
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.3e-48 194.9 264 50.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 9.6e-48 194.5 258 50.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 9.6e-48 194.5 262 50.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.2e-47 194.1 255 50.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.2e-47 194.1 258 51.6
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.8e-47 193.0 266 50.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 4.7e-47 192.2 211 55.5
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.1e-47 191.4 264 48.5
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.1e-46 191.0 266 50.0
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-46 191.0 264 48.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.8e-46 190.3 265 48.7
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 3.1e-46 189.5 266 49.6
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 4.0e-46 189.1 261 51.7
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 8.9e-46 188.0 269 50.6
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.8e-45 185.3 244 52.5
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 5.8e-45 185.3 271 49.8
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 7.6e-45 184.9 252 49.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 9.9e-45 184.5 276 48.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.9e-44 183.0 263 51.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.9e-44 183.0 269 48.7
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-44 182.6 252 48.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-44 182.6 252 48.4
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.8e-44 182.6 269 49.4
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 3.8e-44 182.6 260 50.8
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.9e-44 182.2 248 48.8
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-43 181.0 252 49.2
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-43 181.0 252 49.2
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.9e-43 180.3 272 48.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.9e-43 180.3 262 49.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.2e-43 179.5 269 49.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.4e-43 178.7 274 49.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.4e-43 178.7 266 49.2
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 7.1e-43 178.3 268 45.9
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 9.3e-43 177.9 274 49.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.1e-42 176.8 260 50.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-42 176.0 237 52.7
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 3.5e-42 176.0 252 50.0
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.6e-42 175.6 257 47.1
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.0e-42 175.3 263 47.1
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.7e-41 173.7 252 49.6
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.1e-41 172.2 257 45.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 2.5e-40 169.9 311 43.7
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 3.3e-40 169.5 242 49.6
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.8e-39 166.4 262 46.2
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 3.6e-39 166.0 267 45.7
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.6e-39 166.0 265 46.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 3.6e-39 166.0 270 46.7
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 8.1e-39 164.9 208 50.0
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 8.1e-39 164.9 266 45.1
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 258 45.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-38 164.5 263 44.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.4e-38 164.1 268 45.9
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.4e-38 164.1 268 45.9
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.4e-38 164.1 260 45.0
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.8e-38 163.7 271 45.0
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 6.9e-38 161.8 271 43.5
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.2e-37 161.0 163 59.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-37 160.6 255 45.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-37 160.6 255 45.9
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.5e-37 160.6 269 48.0
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.0e-37 160.2 261 44.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 3.4e-37 159.5 247 48.6
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 4.4e-37 159.1 265 42.3
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.8e-37 158.7 266 48.5
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 5.8e-37 158.7 255 45.9
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-36 157.1 263 44.5
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.7e-36 157.1 261 43.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.2e-36 156.8 262 46.6
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.4e-36 155.2 260 44.6
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.4e-36 155.2 267 43.8
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-35 153.7 149 63.1
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.9e-35 153.7 270 45.2
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 4.2e-35 152.5 262 44.3
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.1e-35 151.8 264 47.0
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.6e-34 150.6 264 45.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.1e-34 150.2 271 42.8
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-34 149.4 263 42.2
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 3.5e-34 149.4 205 45.9
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-34 149.1 264 44.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 4.6e-34 149.1 260 46.9
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 7.9e-34 148.3 266 46.2
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-33 147.5 257 46.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.3e-33 147.5 257 46.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-33 146.7 255 45.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 2.3e-33 146.7 255 45.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.3e-33 146.7 263 43.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.9e-33 146.0 264 43.6
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 5.1e-33 145.6 256 45.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 6.6e-33 145.2 171 56.1
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.5e-32 144.1 166 54.8
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.9e-32 143.7 259 42.9
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.5e-32 143.3 179 54.2
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-31 140.6 260 41.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-31 140.6 147 57.8
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.6e-31 140.6 221 45.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.6e-31 140.6 148 58.1
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 2.8e-31 139.8 192 51.6
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 6.2e-31 138.7 268 38.8
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-30 137.5 250 44.0
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.9e-30 135.2 266 42.1
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 4.5e-29 132.5 272 37.9
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 7.6e-29 131.7 162 50.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 7.6e-29 131.7 264 42.8
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.7e-28 130.6 251 43.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 2.2e-28 130.2 217 47.0
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.2e-28 130.2 161 50.3
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.1e-27 127.9 186 46.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 2.4e-27 126.7 182 50.5
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.4e-27 126.7 135 49.6
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.5e-27 125.6 116 62.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-26 124.4 250 40.0
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.1e-26 123.6 164 51.8
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.1e-26 123.6 268 40.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.1e-26 123.6 254 39.8
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.0e-25 121.3 206 46.1
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.8e-25 120.6 238 41.2
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 3.0e-25 119.8 202 45.0
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.1e-24 117.9 187 46.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.5e-24 117.5 143 50.3
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.4e-24 115.2 167 44.3
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 6.2e-23 112.1 213 38.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 8.1e-23 111.7 249 39.4
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.1e-22 109.8 172 43.6
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.5e-21 105.9 251 37.1
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 4.9e-20 102.4 156 42.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.5e-19 100.1 228 36.8
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.5e-19 99.0 249 34.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.1e-19 98.6 248 34.7
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 7.1e-19 98.6 122 53.3
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-18 95.9 250 34.0
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 5.7e-16 89.0 365 29.3
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 9.6e-16 88.2 189 37.6
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.0e-13 80.5 101 53.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.2e-12 77.0 209 34.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 3.8e-12 76.3 94 51.1
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.0e-12 75.9 61 68.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.1e-11 74.7 256 35.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.4e-11 74.3 62 64.5
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 9.3e-11 71.6 157 34.4
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.7e-09 65.5 69 58.0
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 3.3e-08 63.2 84 50.0
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 3.3e-08 63.2 85 49.4
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 4.3e-08 62.8 159 35.8
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 5.7e-08 62.4 235 33.2
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.6e-07 60.8 153 32.0
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 2.8e-07 60.1 95 41.1
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 1.1e-06 58.2 164 34.1
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-06 57.8 52 53.8
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 1.4e-06 57.8 121 36.4
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.9e-06 55.5 57 57.9


User provided reference genes

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