Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 8.5e-105 383.6 189 100.0
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.7e-76 289.7 191 76.4
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 9.5e-72 273.9 181 79.6
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 8.3e-68 260.8 191 72.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 6.0e-66 254.6 192 69.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.6e-63 246.5 192 69.8
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 6.2e-63 244.6 197 70.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.2e-63 244.6 190 65.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.2e-63 244.6 190 67.4
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 5.8e-61 238.0 192 65.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.7e-60 236.5 194 66.0
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.2e-60 236.1 194 64.4
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.2e-60 236.1 195 66.7
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.9e-60 235.7 190 64.7
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.0e-59 231.1 199 62.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.1e-58 229.6 190 63.2
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.5e-58 228.8 192 65.1
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.3e-57 226.1 188 65.4
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 3.9e-57 225.3 186 61.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.1e-55 219.5 201 62.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-55 219.2 192 63.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.6e-55 218.8 192 63.0
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-54 217.2 191 61.3
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.1e-54 217.2 191 61.3
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.1e-54 215.7 191 61.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.1e-54 215.7 191 61.3
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.0e-54 215.3 192 62.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.8e-54 214.5 204 59.3
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.2e-53 213.8 206 58.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.4e-53 212.2 205 60.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.4e-53 212.2 205 60.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.4e-53 212.2 205 60.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.9e-53 210.7 205 60.5
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-52 209.9 205 60.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-52 209.5 205 60.0
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.4e-51 206.1 185 59.5
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 4.1e-51 205.3 188 60.6
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.0e-49 199.1 182 57.1
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.9e-49 198.7 177 62.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.9e-49 198.7 178 57.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.1e-48 197.2 203 54.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.9e-48 196.4 183 56.8
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.5e-48 196.1 182 57.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.5e-48 196.1 180 56.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 5.6e-48 194.9 190 56.3
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 9.5e-48 194.1 180 60.0
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.6e-47 193.4 197 54.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.2e-47 191.4 190 55.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 8.1e-47 191.0 167 61.1
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-46 190.3 197 52.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-46 190.3 196 57.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.4e-46 190.3 179 59.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.0e-45 186.4 184 56.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 9.9e-45 184.1 200 51.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.3e-44 183.7 184 52.2
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.7e-44 183.3 186 55.9
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.2e-44 183.0 196 53.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.9e-44 182.6 184 54.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.8e-44 182.2 195 51.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 6.4e-44 181.4 189 52.9
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.4e-43 180.3 187 49.2
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.9e-43 179.9 197 53.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.2e-43 178.7 198 54.0
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.2e-43 178.7 202 52.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.4e-43 178.3 176 55.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.2e-43 177.6 175 56.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.1e-42 176.4 189 53.4
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.5e-42 175.6 189 54.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.6e-42 175.3 193 53.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.0e-42 174.9 191 51.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 6.0e-42 174.9 185 53.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 6.0e-42 174.9 188 52.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-41 173.7 189 52.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.7e-41 173.3 122 74.6
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.7e-41 173.3 190 52.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.3e-41 172.9 186 56.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.0e-41 172.6 198 50.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.0e-41 172.6 191 53.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 3.9e-41 172.2 184 51.6
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-40 170.2 195 48.7
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.6e-40 168.3 192 51.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.3e-40 167.9 186 48.9
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 7.3e-40 167.9 205 49.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.2e-39 167.2 228 49.1
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.1e-39 166.4 196 47.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-39 166.4 202 50.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.1e-39 166.4 202 49.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-39 166.4 199 49.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.7e-39 165.2 204 47.5
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-38 164.1 191 49.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.2e-37 160.6 186 52.2
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.6e-37 159.5 199 48.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.4e-37 159.1 198 47.5
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 4.4e-37 158.7 196 49.5
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.8e-37 158.3 188 48.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 9.9e-37 157.5 204 47.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-36 157.1 203 45.8
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-36 156.8 193 47.7
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-36 156.4 177 51.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.2e-36 156.4 187 49.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.9e-36 156.0 207 48.8
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-36 156.0 175 49.7
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.8e-36 155.6 193 46.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-36 155.2 175 49.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-35 154.1 193 45.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.4e-35 153.7 190 45.3
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.9e-35 153.3 184 50.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.2e-35 152.5 182 46.7
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 4.2e-35 152.1 196 47.4
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.2e-35 152.1 186 48.9
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.3e-35 151.0 179 48.6
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 9.3e-35 151.0 186 48.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.3e-35 151.0 206 45.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-34 150.6 188 48.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.6e-34 150.2 187 48.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-34 150.2 190 48.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.6e-34 150.2 199 45.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-34 149.8 189 48.1
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-34 149.8 186 48.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.6e-34 148.7 187 46.5
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.0e-34 148.3 178 47.8
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 6.0e-34 148.3 187 46.5
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.0e-33 147.5 180 49.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.7e-33 146.7 198 45.5
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.3e-33 146.4 206 42.7
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.3e-33 146.4 177 46.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.3e-33 146.4 187 50.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.0e-33 146.0 197 44.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.9e-33 145.6 152 52.6
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.1e-33 145.2 181 48.1
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.1e-33 145.2 189 44.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.1e-33 145.2 188 46.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.1e-33 145.2 188 46.8
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.6e-33 144.8 177 47.5
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.6e-33 144.8 152 52.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.6e-33 144.8 194 45.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.6e-33 144.8 197 45.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 8.7e-33 144.4 123 60.2
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-32 144.1 178 47.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-32 144.1 184 45.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.5e-32 143.7 110 60.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.5e-32 142.9 187 48.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 5.6e-32 141.7 170 48.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.3e-32 141.4 167 50.3
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 9.6e-32 141.0 196 45.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 9.6e-32 141.0 196 45.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.3e-31 140.6 150 49.3
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-31 140.6 197 45.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.1e-30 137.5 190 45.3
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.4e-30 137.1 185 50.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-30 136.0 174 46.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.9e-30 134.8 170 46.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.9e-30 134.8 154 45.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-28 130.6 187 46.0
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-28 129.8 136 50.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.4e-28 127.9 195 43.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-27 126.7 135 50.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.1e-27 124.8 137 49.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-26 124.0 191 44.5
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-25 120.9 174 45.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 7.4e-24 114.8 174 46.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.2e-23 111.7 132 50.0
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.1e-22 109.4 161 41.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.9e-22 108.2 168 41.7
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-21 107.5 271 32.1
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-21 106.7 187 40.6
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.8e-21 105.1 161 36.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.3e-20 104.0 188 40.4
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.7e-20 103.6 193 40.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.9e-20 102.8 191 39.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.4e-20 101.7 112 46.4
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.7e-18 96.3 128 48.4
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.6e-18 95.5 188 38.8
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.6e-18 95.5 188 38.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 7.9e-18 94.7 188 39.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-17 94.4 188 38.3
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-17 93.6 188 39.4
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-17 93.6 110 50.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.3e-16 89.4 197 37.6
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.9e-14 81.6 160 36.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.0e-12 77.8 107 40.2
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.0e-12 77.8 199 29.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 7.9e-10 68.2 63 54.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 8.7e-09 64.7 157 33.1
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.3e-08 62.8 126 38.1


User provided reference genes

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