Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.2e-205 718.8 369 100.0
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 4.5e-142 508.4 363 70.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.9e-133 479.2 355 68.7
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.9e-130 468.8 369 64.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 5.1e-130 468.4 369 63.7
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 8.2e-128 461.1 369 63.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.1e-127 460.7 365 66.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 8.8e-122 441.0 367 61.9
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.5e-118 428.7 369 61.2
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.6e-115 420.2 371 58.5
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 8.8e-114 414.5 365 59.5
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.6e-113 412.9 365 58.1
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 2.2e-112 409.8 367 59.4
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.8e-112 409.5 371 57.4
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.8e-112 409.5 379 55.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.8e-111 406.8 381 58.0
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 5.3e-111 405.2 373 57.4
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.2e-110 404.1 370 57.0
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.9e-110 401.7 365 56.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.0e-109 401.0 380 57.1
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.0e-109 401.0 380 57.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.2e-109 399.8 360 60.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.9e-109 399.4 367 54.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 5.0e-109 398.7 367 54.5
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 6.5e-109 398.3 364 57.7
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.2e-108 394.8 375 56.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-107 392.5 368 53.8
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.6e-107 392.5 368 57.9
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.0e-106 391.0 367 58.0
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.2e-106 388.7 364 56.0
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 2.0e-105 386.7 363 57.0
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.3e-105 386.0 395 50.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.3e-105 386.0 395 50.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 4.4e-105 385.6 362 56.1
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.2e-104 383.3 364 56.6
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.8e-104 382.1 364 56.3
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.8e-104 382.1 364 56.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.8e-104 382.1 398 50.5
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.3e-103 378.6 364 54.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.1e-99 366.7 367 54.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.4e-98 364.0 374 52.1
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.8e-98 363.6 361 54.6
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.0e-98 362.8 366 52.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.2e-98 362.1 364 51.9
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 6.8e-98 361.7 364 53.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.5e-97 360.5 317 57.7
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.0e-97 360.1 277 64.3
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 2.0e-97 360.1 370 52.2
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 5.7e-97 358.6 369 52.6
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 9.7e-97 357.8 367 53.1
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.3e-96 357.5 277 63.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-96 357.1 298 57.0
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.7e-96 357.1 367 53.1
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.2e-96 356.7 368 52.4
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.3e-96 354.8 368 51.9
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.1e-95 354.4 364 52.5
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.0e-95 351.7 360 52.8
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 7.0e-95 351.7 368 51.6
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.2e-94 350.9 364 53.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.2e-93 346.7 271 59.0
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 5.0e-93 345.5 361 50.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.9e-92 343.6 376 48.1
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.2e-92 342.8 362 49.2
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-92 342.8 363 52.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.2e-92 342.8 368 50.5
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 5.5e-92 342.0 381 49.9
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.1e-91 340.1 366 50.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 2.7e-91 339.7 360 52.5
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.6e-91 339.3 378 50.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.6e-91 339.3 363 51.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 8.0e-91 338.2 377 49.6
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 8.0e-91 338.2 370 50.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.4e-90 337.4 365 49.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.4e-90 337.4 287 56.8
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.3e-90 336.7 363 50.4
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.3e-90 336.7 375 49.6
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 3.0e-90 336.3 363 49.9
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.2e-89 334.3 361 51.5
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.5e-89 334.0 370 50.3
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.4e-89 332.8 298 54.7
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 7.5e-89 331.6 364 49.2
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 9.8e-89 331.3 377 48.0
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.8e-88 329.7 358 49.2
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-87 327.8 364 50.5
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.1e-87 327.8 358 49.7
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.4e-87 327.4 367 48.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.4e-87 327.4 336 53.3
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.8e-87 327.0 359 49.9
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.1e-87 325.9 357 49.3
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.1e-87 324.7 369 49.3
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.2e-86 324.3 372 49.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.7e-86 323.2 367 49.6
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.7e-86 323.2 370 47.8
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 4.5e-86 322.4 362 50.3
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 5.9e-86 322.0 360 50.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.9e-86 322.0 270 58.1
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-85 320.9 362 50.6
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-85 320.9 260 60.4
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.8e-85 319.3 357 48.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 5.0e-85 318.9 365 49.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 6.6e-85 318.5 357 46.8
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 6.6e-85 318.5 363 48.5
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 8.6e-85 318.2 368 51.4
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 8.6e-85 318.2 325 52.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.1e-84 317.8 357 47.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.9e-84 317.0 362 51.1
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.9e-84 317.0 357 48.5
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.3e-84 316.2 366 48.4
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.8e-83 313.2 270 56.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 3.6e-83 312.8 363 47.4
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.7e-83 312.4 369 48.5
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.7e-83 312.4 298 53.4
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 6.1e-83 312.0 355 47.3
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 8.0e-83 311.6 358 45.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 3.0e-82 309.7 365 47.1
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 6.8e-82 308.5 271 56.5
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.5e-81 307.4 363 46.3
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 7.5e-81 305.1 363 47.4
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 9.8e-81 304.7 281 53.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.3e-80 301.6 313 49.8
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-79 300.8 370 45.1
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 9.2e-79 298.1 274 54.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.6e-78 297.4 299 50.2
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.9e-77 292.7 318 50.6
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.3e-76 289.7 361 46.5
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 4.3e-76 289.3 313 50.5
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.2e-74 282.3 307 46.9
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 5.2e-74 282.3 282 52.8
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.7e-69 267.3 379 41.4
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.9e-69 266.2 227 55.5
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.1e-68 264.6 270 48.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.1e-68 264.6 270 48.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 7.3e-68 261.9 270 48.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.6e-67 259.6 318 45.3
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-66 257.7 319 49.8
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.3e-66 256.9 241 52.3
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.1e-66 256.5 230 55.2
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 3.4e-65 253.1 235 54.5
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-63 247.3 370 42.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.4e-63 246.9 312 41.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 6.0e-62 242.3 289 46.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.7e-61 240.7 358 42.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.6e-61 238.8 218 56.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.2e-59 234.6 213 55.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 9.2e-55 218.4 264 45.8
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 6.0e-54 215.7 323 41.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.6e-52 209.1 320 39.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.4e-50 203.8 156 59.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.5e-49 201.1 327 38.8
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.3e-44 183.3 255 40.4
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.6e-43 181.0 450 30.4
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.8e-42 177.6 184 50.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.4e-39 167.2 169 55.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.2e-39 166.8 220 43.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 2.3e-37 160.6 194 45.9
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 1.1e-36 158.3 114 58.8
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.5e-33 147.9 170 45.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 8.4e-32 142.1 283 31.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.4e-31 140.6 203 41.9
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 9.3e-31 138.7 161 45.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.1e-30 137.5 204 42.6
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.1e-27 127.5 135 48.9
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-25 121.3 152 48.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.5e-25 121.3 76 64.5
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.9e-23 114.4 290 28.6
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.0e-21 108.6 150 42.7
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 3.0e-21 107.1 112 45.5
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.4e-18 97.4 102 51.0
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 6.9e-18 95.9 105 44.8
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.2e-17 95.1 78 56.4
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.2e-16 90.9 132 35.6
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-16 90.5 140 34.3
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.6e-14 83.2 85 44.7
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 6.1e-14 82.8 87 50.6
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.9e-14 82.4 85 43.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-13 81.6 104 41.3
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.8e-13 81.3 40 87.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 5.3e-10 69.7 47 72.3
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.5e-09 68.2 319 23.5
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 7.7e-09 65.9 55 54.5
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 1.3e-08 65.1 45 68.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.2e-08 64.3 56 51.8
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.4e-07 58.9 130 35.4


User provided reference genes

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