Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 1.3e-304 1048.9 525 100.0
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 3.9e-83 313.2 246 70.7
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 2.5e-77 293.9 250 68.0
Haze_07057 Corylus avellana HOM05D009231 ORTHO05D010800 3.7e-73 280.0 258 60.1
Cfa021528 Carpinus fangiana HOM05D009231 ORTHO05D010800 9.7e-66 255.4 252 57.1
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 1.3e-62 245.0 249 57.0
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 6.5e-62 242.7 495 38.8
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 5.7e-58 229.6 249 53.8
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 7.4e-58 229.2 251 54.6
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 4.1e-56 223.4 272 54.4
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 2.0e-55 221.1 252 53.2
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 2.2e-54 217.6 255 50.6
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 5.0e-54 216.5 237 52.3
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 2.7e-52 210.7 249 49.0
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 3.6e-52 210.3 242 48.3
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 3.0e-51 207.2 251 50.2
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 6.7e-51 206.1 238 48.7
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 8.8e-51 205.7 254 48.4
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.4e-50 203.4 245 49.8
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 5.7e-50 203.0 242 46.7
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 1.3e-49 201.8 249 49.0
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.8e-49 200.7 238 49.2
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 6.3e-49 199.5 245 48.2
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 6.3e-49 199.5 242 46.7
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.4e-48 198.4 245 47.8
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 5.3e-48 196.4 248 48.0
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.7e-47 194.1 241 48.5
QL07p036848 Quercus lobata HOM05D009231 ORTHO05D010800 7.7e-47 192.6 272 46.3
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 3.8e-46 190.3 252 47.6
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.1e-45 188.7 259 47.5
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 1.6e-44 184.9 258 44.6
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 8.0e-44 182.6 253 43.9
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 1.0e-43 182.2 250 46.4
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 3.0e-43 180.6 253 43.9
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 4.4e-42 176.8 258 46.1
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.3e-41 175.3 257 44.4
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 1.7e-41 174.9 260 41.9
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.1e-40 172.2 251 45.4
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 2.0e-39 167.9 242 43.4
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 1.3e-38 165.2 234 45.3
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 2.3e-38 164.5 245 43.7
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 2.9e-38 164.1 245 43.3
Manes.09G044800 Manihot esculenta HOM05D009231 ORTHO05D010800 2.9e-38 164.1 255 42.4
Manes.08G032900 Manihot esculenta HOM05D009231 ORTHO05D010800 8.6e-38 162.5 256 42.6
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 1.1e-37 162.2 245 45.3
Duzib093G0513 Durio zibethinus HOM05D009231 ORTHO05D010800 1.5e-37 161.8 263 42.6
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 3.6e-36 157.1 280 39.6
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 4.7e-36 156.8 243 43.2
Thecc.05G103300 Theobroma cacao HOM05D009231 ORTHO05D010800 8.0e-36 156.0 260 38.5
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 1.8e-35 154.8 237 40.1
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 2.3e-35 154.5 236 42.8
Gohir.A01G201800 Gossypium hirsutum HOM05D009231 ORTHO05D010800 3.0e-35 154.1 278 38.1
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 8.8e-35 152.5 256 39.8
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 1.2e-34 152.1 253 39.9
Hma1.2p1_0079F.1_g041880 Hydrangea macrophylla HOM05D009231 ORTHO05D010800 1.5e-34 151.8 278 39.6
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 2.6e-34 151.0 246 41.5
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 2.6e-34 151.0 253 39.9
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 4.4e-34 150.2 278 40.3
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 2.8e-33 147.5 302 37.1
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 6.3e-33 146.4 260 36.2
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 6.3e-33 146.4 260 36.2
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.4e-32 145.2 256 37.5
Actinidia32045 Actinidia chinensis HOM05D009231 ORTHO05D010800 1.8e-32 144.8 255 39.6
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.8e-32 144.8 245 39.6
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 2.4e-32 144.4 283 38.2
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 5.4e-32 143.3 251 40.6
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 9.2e-32 142.5 257 38.5
Gorai.002G235600 Gossypium raimondii HOM05D009231 ORTHO05D010800 1.2e-31 142.1 259 39.0
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 1.2e-31 142.1 247 39.7
TAR636G0160 Trochodendron aralioides HOM05D009231 ORTHO05D010800 2.3e-30 137.9 253 36.4
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 2.9e-30 137.5 265 36.2
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 3.8e-30 137.1 261 38.7
Prupe.7G095600 Prunus persica HOM05D015804 ORTHO05D010800 3.8e-30 137.1 253 39.9
Cpa.g.sc104.38 Carica papaya HOM05D009231 ORTHO05D010800 6.6e-30 136.3 273 35.9
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 8.6e-30 136.0 273 35.9
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 8.6e-30 136.0 256 36.7
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 1.1e-29 135.6 238 40.8
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 1.5e-29 135.2 242 39.7
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 2.5e-29 134.4 259 37.1
Actinidia03894 Actinidia chinensis HOM05D009231 ORTHO05D010800 5.6e-29 133.3 255 37.3
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 2.8e-28 131.0 238 35.7
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 1.0e-27 129.0 245 34.7
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 3.0e-27 127.5 244 36.5
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 2.0e-26 124.8 250 35.6
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 2.0e-26 124.8 297 34.3
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 3.4e-26 124.0 239 37.2
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 3.4e-26 124.0 238 35.3
Nn6g34706 Nelumbo nucifera HOM05D009231 ORTHO05D010800 3.4e-26 124.0 201 38.8
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 3.4e-26 124.0 230 37.4
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 5.7e-26 123.2 155 47.7
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 5.7e-26 123.2 152 49.3
TAR633G1440 Trochodendron aralioides HOM05D009231 ORTHO05D010800 9.8e-26 122.5 294 33.0
RcHm_v2.0_Chr3g0475841 Rosa chinensis HOM05D015804 ORTHO05D010800 1.7e-25 121.7 250 35.6
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 2.2e-25 121.3 245 33.9
PGR142G1154 Punica granatum HOM05D009231 ORTHO05D010800 6.4e-25 119.8 264 37.5
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 1.1e-24 119.0 257 32.3
Nn2g14291 Nelumbo nucifera HOM05D009231 ORTHO05D010800 1.1e-24 119.0 211 37.4
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 3.2e-24 117.5 175 40.6
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 4.1e-24 117.1 246 34.6
Gohir.D01G191700 Gossypium hirsutum HOM05D009231 ORTHO05D010800 7.0e-24 116.3 193 40.9
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 7.0e-24 116.3 270 31.9
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 1.2e-23 115.5 257 36.6
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 2.0e-23 114.8 246 32.5
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 5.9e-23 113.2 272 32.0
Potri.006G203800 Populus trichocarpa HOM05D009231 ORTHO05D010800 1.0e-22 112.5 246 35.4
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 6.6e-22 109.8 241 34.9
FvH4_6g20250 Fragaria vesca HOM05D015804 ORTHO05D010800 6.6e-22 109.8 257 37.0
FAN14G2856 Fragaria x ananassa HOM05D015804 ORTHO05D010800 1.1e-21 109.0 257 35.8
MD12G1039600 Malus domestica HOM05D015804 ORTHO05D010800 2.5e-21 107.8 207 38.2
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 4.3e-21 107.1 263 31.6
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 5.6e-21 106.7 241 34.9
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 7.3e-21 106.3 226 33.6
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 7.3e-21 106.3 253 37.9
Dinv31754 Davidia involucrata HOM05D009231 ORTHO05D010800 4.7e-20 103.6 179 39.7
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 8.0e-20 102.8 148 45.3
FAN05G3991 Fragaria x ananassa HOM05D015804 ORTHO05D010800 1.1e-19 102.4 259 32.8
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 1.4e-19 102.1 251 31.9
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 1.3e-17 95.5 247 35.2
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 1.7e-17 95.1 239 29.3
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 1.1e-16 92.4 92 51.1
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 1.9e-16 91.7 243 31.7
FAN02G3496 Fragaria x ananassa HOM05D015804 ORTHO05D010800 2.4e-16 91.3 259 32.0
COL.COLO4_29583 Corchorus olitorius HOM05D009231 ORTHO05D010800 3.2e-16 90.9 173 40.5
FAN05G1852 Fragaria x ananassa HOM05D015804 ORTHO05D010800 4.1e-16 90.5 261 30.3
FAN09G0232 Fragaria x ananassa HOM05D015804 ORTHO05D010800 1.2e-15 89.0 259 32.4
Hund03818 Selenicereus undatus HOM05D009231 ORTHO05D010800 3.5e-15 87.4 263 31.9
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 6.0e-15 86.7 234 30.8
Zm00001eb434190 Zea mays HOM05D007097 ORTHO05D008131 1.3e-14 85.5 253 30.4
Aqoxy1G00673 Aquilegia oxysepala HOM05D009231 ORTHO05D010800 1.5e-13 82.0 286 31.5
ATR0772G209 Amborella trichopoda HOM05D009231 ORTHO05D010800 1.9e-13 81.6 270 29.3
Nitab4.5_0002958g0010 Nicotiana tabacum HOM05D019826 ORTHO05D022411 1.9e-13 81.6 247 30.8
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 4.3e-13 80.5 254 28.3
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 4.3e-13 80.5 81 54.3
Duzib106G2060 Durio zibethinus HOM05D009231 ORTHO05D010800 5.6e-13 80.1 135 39.3
Cc06_g06490 Coffea canephora HOM05D019826 ORTHO05D022411 1.6e-12 78.6 288 28.1
SEGI_34425 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 2.8e-12 77.8 151 33.8
Sc20g0006710 Simmondsia chinensis HOM05D009231 ORTHO05D010800 1.1e-11 75.9 264 30.3
Mapoly0048s0108 Marchantia polymorpha HOM05D017347 ORTHO05D008131 1.8e-11 75.1 97 42.3
CDE08G0923 Ceratophyllum demersum HOM05D009231 ORTHO05D010800 3.1e-11 74.3 257 28.4
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 5.2e-11 73.6 98 38.8
CiPaw.14G034700 Carya illinoinensis HOM05D024410 ORTHO05D024910 2.6e-10 71.2 265 27.5
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 2.6e-10 71.2 97 41.2
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 3.4e-10 70.9 263 29.7
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 9.9e-10 69.3 93 37.6
SEGI_18590 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 1.7e-09 68.6 126 31.7
HPP92_023078 Vanilla planifolia HOM05D009231 ORTHO05D010800 1.7e-09 68.6 266 26.7
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 2.2e-09 68.2 49 63.3
EL10Ac7g16802 Beta vulgaris HOM05D007097 ORTHO05D008131 1.2e-07 62.4 246 32.1
Ah.08g210080 Amaranthus hybridus HOM05D009231 ORTHO05D010800 1.6e-07 62.0 266 25.9
Nn1g07256 Nelumbo nucifera HOM05D007097 ORTHO05D008131 7.8e-07 59.7 40 62.5
Sabra06G0157100 Salix brachista HOM05D009231 ORTHO05D010800 7.8e-07 59.7 262 28.2
PGSC0003DMG400016422 Solanum tuberosum HOM05D019826 ORTHO05D022411 1.0e-06 59.3 228 28.1
Sc20g0006720 Simmondsia chinensis HOM05D007097 ORTHO05D008131 1.7e-06 58.5 90 33.3
PSO339G1113 Papaver somniferum HOM05D027017 ORTHO05D010800 3.0e-06 57.8 208 30.3


User provided reference genes

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