Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 5.3e-198 694.1 344 100.0
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 3.1e-137 492.3 344 72.1
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 2.0e-128 463.0 311 74.0
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 1.4e-126 456.8 318 72.6
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 1.5e-115 420.2 309 65.0
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 9.7e-115 417.5 325 64.9
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 1.2e-112 410.6 326 59.5
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 1.5e-112 410.2 322 64.0
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.0e-112 409.8 332 60.2
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 3.4e-112 409.1 341 60.7
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.2e-111 406.4 356 62.1
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 2.9e-111 406.0 308 64.9
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 5.0e-111 405.2 340 58.5
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 1.9e-110 403.3 306 65.4
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 1.9e-110 403.3 306 63.1
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 5.5e-110 401.7 333 59.2
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 5.5e-110 401.7 315 63.5
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 2.1e-109 399.8 317 62.1
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 7.9e-109 397.9 322 60.9
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 1.0e-108 397.5 299 63.5
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 8.8e-108 394.4 301 62.5
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 4.3e-107 392.1 301 62.8
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 5.7e-107 391.7 316 59.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 9.7e-107 391.0 336 57.4
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 2.2e-106 389.8 318 59.1
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 2.2e-106 389.8 319 59.6
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.8e-106 389.4 309 62.1
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.7e-106 389.0 334 56.3
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 8.2e-106 387.9 335 58.2
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 8.2e-106 387.9 300 62.0
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 2.4e-105 386.3 302 60.6
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.1e-105 386.0 315 61.0
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 4.1e-105 385.6 316 58.2
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 5.3e-105 385.2 345 55.7
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 9.1e-105 384.4 320 58.4
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 1.5e-104 383.6 301 61.5
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.0e-103 380.9 309 61.2
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 1.7e-103 380.2 302 60.6
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 1.7e-103 380.2 337 55.2
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 2.2e-103 379.8 309 59.2
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 2.9e-103 379.4 302 60.9
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 2.9e-103 379.4 318 56.9
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 3.8e-103 379.0 327 57.5
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 3.8e-103 379.0 306 59.2
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 5.0e-103 378.6 314 57.6
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 6.5e-103 378.3 341 56.3
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.1e-102 377.5 300 60.0
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 5.5e-102 375.2 341 54.0
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 7.2e-102 374.8 319 56.4
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 2.1e-101 373.2 300 59.0
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 2.1e-101 373.2 334 56.0
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 3.6e-101 372.5 282 62.4
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 6.1e-101 371.7 306 60.1
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.0e-100 370.9 285 62.5
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 3.9e-100 369.0 323 56.0
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 3.3e-99 365.9 326 59.2
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 5.7e-99 365.2 334 52.7
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 5.7e-99 365.2 339 55.2
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 7.4e-99 364.8 282 64.9
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.0e-96 356.7 326 55.2
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 3.5e-96 355.9 329 55.3
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 2.2e-95 353.2 297 60.6
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.2e-94 349.0 430 46.7
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 5.5e-94 348.6 282 60.6
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 5.5e-94 348.6 329 53.8
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 5.2e-92 342.0 298 56.7
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.8e-90 336.3 268 61.6
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 4.8e-90 335.5 313 53.0
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 6.3e-90 335.1 293 52.9
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 6.3e-90 335.1 468 42.1
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 3.1e-89 332.8 299 52.5
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 1.0e-87 327.8 292 54.8
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 1.7e-87 327.0 279 55.6
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 1.1e-86 324.3 326 52.1
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 4.7e-85 318.9 331 50.8
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 6.8e-84 315.1 282 52.5
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 2.6e-83 313.2 300 50.7
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.3e-82 310.8 238 63.4
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.4e-81 307.4 242 60.3
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 2.4e-81 306.6 260 55.0
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 7.7e-80 301.6 220 66.4
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 8.5e-79 298.1 283 50.9
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 2.1e-77 293.5 340 50.0
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.4e-76 290.8 291 46.0
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.4e-75 286.2 248 57.3
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 4.4e-75 285.8 237 57.4
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.0e-71 274.6 232 56.9
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.5e-70 270.8 202 64.4
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.2e-66 256.9 323 43.7
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.6e-64 250.8 281 42.7
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 3.5e-64 249.6 209 58.4
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 5.9e-64 248.8 207 57.0
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.8e-60 237.3 311 38.9
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 1.8e-52 210.7 321 39.3
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 4.1e-49 199.5 335 34.9
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.2e-48 198.0 195 52.8
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.7e-47 194.1 170 56.5
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.5e-46 190.3 195 51.3
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 5.2e-44 182.6 439 32.6
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 8.9e-44 181.8 150 61.3
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.2e-43 181.4 317 36.6
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 5.4e-41 172.6 315 34.9
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.6e-40 171.0 163 52.8
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 2.1e-40 170.6 142 58.5
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 3.9e-39 166.4 155 52.3
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 8.4e-34 148.7 103 65.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 4.2e-33 146.4 126 56.3
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.6e-29 134.4 100 62.0
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 9.0e-28 128.6 139 52.5
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 1.1e-25 121.7 83 67.5
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 9.3e-25 118.6 270 27.8
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 1.1e-22 111.7 96 52.1
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 4.3e-22 109.8 86 61.6
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 4.3e-22 109.8 340 26.8
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 3.4e-19 100.1 76 61.8
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.4e-17 94.7 61 68.9
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 6.7e-15 85.9 315 25.1
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 2.4e-12 77.4 73 58.9


User provided reference genes

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