Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 5.9e-155 550.8 278 100.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.9e-122 441.8 304 75.7
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.9e-122 441.8 304 75.7
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 7.3e-121 437.6 312 72.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.8e-120 435.6 312 72.4
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.0e-118 429.5 312 72.4
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.6e-113 411.4 292 72.3
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 6.2e-112 407.9 315 69.8
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 2.0e-110 402.9 315 69.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.7e-109 399.8 308 69.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 3.2e-108 395.6 296 69.9
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.2e-107 393.7 283 71.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 4.6e-107 391.7 293 70.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 4.6e-107 391.7 277 72.6
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.7e-106 389.8 296 69.3
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 3.9e-106 388.7 289 69.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 8.7e-106 387.5 293 68.3
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 8.7e-106 387.5 301 68.4
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.1e-105 387.1 301 68.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.3e-105 385.2 309 67.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 7.3e-105 384.4 309 67.3
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 9.6e-105 384.0 273 74.0
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 2.8e-104 382.5 309 65.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.8e-104 382.5 312 66.7
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.1e-103 380.6 301 67.1
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.1e-103 380.6 285 70.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-103 380.6 311 64.6
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.1e-103 379.0 332 63.0
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.0e-103 378.6 336 63.1
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 4.0e-103 378.6 292 67.1
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 5.3e-103 378.3 282 69.9
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 5.3e-103 378.3 284 68.0
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.9e-103 377.9 311 64.6
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.9e-103 377.9 282 69.9
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 9.0e-103 377.5 307 65.8
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 9.0e-103 377.5 270 72.6
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.5e-102 376.7 282 69.5
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.5e-102 376.7 279 70.6
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.0e-102 376.3 305 66.9
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.4e-102 375.6 292 67.5
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.4e-102 375.6 324 63.0
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 5.8e-102 374.8 296 65.5
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 7.6e-102 374.4 286 69.9
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 7.6e-102 374.4 282 68.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 9.9e-102 374.0 307 63.5
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.3e-101 373.6 305 66.6
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.3e-101 373.6 274 70.4
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.7e-101 373.2 280 69.3
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.7e-101 373.2 280 69.3
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 3.8e-101 372.1 264 72.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 4.9e-101 371.7 293 67.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.9e-101 371.7 293 67.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.9e-101 371.7 308 62.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 8.4e-101 370.9 306 62.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 8.4e-101 370.9 300 65.3
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.9e-100 369.8 267 71.2
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 3.2e-100 369.0 295 66.4
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 5.4e-100 368.2 279 68.8
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.4e-100 368.2 338 60.1
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 5.4e-100 368.2 276 69.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.1e-100 367.9 309 61.5
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 7.1e-100 367.9 269 70.6
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 9.3e-100 367.5 316 63.3
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 9.3e-100 367.5 282 68.8
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.6e-99 366.7 334 59.9
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.1e-99 366.3 338 59.8
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.1e-99 366.3 316 63.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.7e-99 365.9 276 69.2
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 4.6e-99 365.2 267 70.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 7.8e-99 364.4 303 65.0
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 7.8e-99 364.4 265 70.6
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.8e-99 364.4 304 64.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.8e-99 364.4 318 62.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.3e-98 363.6 291 64.6
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 3.0e-98 362.5 291 67.0
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 3.9e-98 362.1 283 68.2
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 6.6e-98 361.3 266 70.3
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 8.7e-98 360.9 267 70.0
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 1.5e-97 360.1 270 70.4
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 2.5e-97 359.4 277 70.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.3e-97 359.0 313 62.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.6e-97 358.2 265 70.2
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 7.3e-97 357.8 266 68.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.1e-96 356.3 270 70.0
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.8e-96 355.9 259 71.4
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.8e-96 355.9 259 71.4
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 4.0e-95 352.1 253 71.5
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 5.3e-95 351.7 291 66.0
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 9.0e-95 350.9 268 67.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 4.5e-94 348.6 269 66.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.9e-93 345.9 268 65.7
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.9e-93 345.1 266 66.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 4.2e-92 342.0 283 65.4
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.3e-90 337.0 258 66.3
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 9.6e-89 330.9 247 69.6
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.8e-88 329.3 258 65.1
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 6.2e-88 328.2 270 64.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.1e-87 327.4 270 63.0
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.0e-87 325.5 378 51.1
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.3e-87 325.1 325 55.4
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 6.9e-87 324.7 249 68.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 2.5e-84 316.2 262 62.6
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 7.1e-84 314.7 265 59.6
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.7e-83 312.8 264 64.4
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 4.6e-83 312.0 228 68.4
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.3e-82 309.7 237 67.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.0e-82 309.3 266 64.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 5.6e-81 305.1 258 62.4
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.1e-79 300.8 263 58.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.4e-79 299.7 234 66.2
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 9.0e-79 297.7 257 63.0
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.6e-78 294.7 263 58.6
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-77 292.4 259 61.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 5.5e-76 288.5 220 69.5
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.7e-75 286.2 269 54.6
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 3.1e-71 272.7 262 54.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 6.9e-71 271.6 266 56.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.7e-69 266.9 222 63.5
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 2.9e-69 266.2 235 62.1
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.5e-69 265.0 251 59.0
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.2e-67 260.8 284 52.5
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.4e-63 246.5 237 57.4
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.4e-60 237.3 185 68.1
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 7.0e-55 218.4 177 65.5
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.5e-54 216.1 178 62.9
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-52 211.1 178 61.8
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.9e-52 210.3 117 84.6
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 7.2e-52 208.4 123 82.1
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 7.2e-52 208.4 123 82.1
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 9.4e-52 208.0 120 84.2
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-51 207.6 116 85.3
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 5.7e-49 198.7 183 59.6
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.7e-48 196.1 118 79.7
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.0e-46 190.3 115 80.0
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 5.0e-45 185.7 120 75.8
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 6.5e-45 185.3 165 59.4
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.1e-44 184.5 260 41.2
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.2e-41 174.5 157 59.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 3.7e-40 169.5 230 43.5
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.6e-38 164.1 123 65.0
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.8e-37 159.5 127 67.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 6.5e-37 158.7 160 54.4
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.2e-32 143.7 122 63.9
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.4e-31 140.2 115 60.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.2e-30 137.9 82 80.5
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 5.5e-28 129.0 77 85.7
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.1e-27 125.6 92 65.2
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-23 114.0 70 77.1
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.1e-23 112.8 72 73.6
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 5.4e-23 112.5 70 80.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.5e-22 109.4 142 46.5
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.1e-20 104.8 197 40.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.0e-17 94.0 125 40.8
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 4.4e-17 92.8 90 56.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 4.4e-17 92.8 90 56.7
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.9e-16 90.1 70 65.7
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.7e-14 83.6 45 84.4
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-12 78.2 96 45.8
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-12 77.0 46 76.1
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 2.1e-06 57.4 71 46.5


User provided reference genes

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