Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 1.7e-131 473.8 227 100.0
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.3e-83 314.7 227 69.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 4.4e-76 289.7 234 64.1
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.2e-75 287.3 227 64.8
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 7.8e-73 278.9 222 64.0
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.8e-70 270.4 223 63.7
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 3.6e-70 270.0 223 61.4
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 3.6e-70 270.0 225 60.9
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 8.1e-70 268.9 227 61.2
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.1e-69 268.5 177 70.1
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 6.0e-65 252.7 188 63.3
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 3.0e-64 250.4 222 57.2
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 2.5e-63 247.3 228 56.1
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 4.3e-63 246.5 233 57.5
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 7.3e-63 245.7 222 57.7
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 1.6e-62 244.6 213 59.6
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 2.8e-62 243.8 221 56.6
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 2.8e-62 243.8 221 57.5
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 4.8e-62 243.0 226 56.6
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 3.1e-61 240.4 194 58.2
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 3.1e-61 240.4 221 57.0
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 5.3e-61 239.6 223 56.1
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 9.0e-61 238.8 240 52.5
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 3.4e-60 236.9 216 56.0
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 3.4e-60 236.9 225 55.1
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 2.2e-59 234.2 221 55.2
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 6.4e-59 232.6 228 54.4
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 6.4e-59 232.6 223 49.8
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.4e-58 230.7 214 56.1
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 5.4e-58 229.6 213 54.5
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 1.2e-57 228.4 211 55.5
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 1.6e-57 228.0 175 60.6
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 2.1e-57 227.6 225 52.4
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.5e-57 226.9 211 56.4
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 4.6e-57 226.5 213 54.0
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 7.8e-57 225.7 218 51.4
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.0e-56 225.3 186 58.1
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 1.3e-56 224.9 188 58.0
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 5.1e-56 223.0 205 57.6
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.5e-55 221.5 172 60.5
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 1.9e-55 221.1 148 66.9
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 3.3e-55 220.3 172 59.9
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 9.6e-55 218.8 231 48.1
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.6e-54 216.9 231 47.6
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 2.4e-53 214.2 221 52.5
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 5.3e-53 213.0 169 55.0
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 6.9e-53 212.6 231 46.8
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 9.0e-53 212.2 226 49.6
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.2e-52 211.8 228 49.1
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 2.0e-52 211.1 231 46.3
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 9.9e-52 208.8 203 49.3
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.9e-51 207.2 224 50.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.8e-51 206.8 223 50.2
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 3.8e-51 206.8 203 50.2
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 4.9e-51 206.5 188 55.3
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.9e-50 204.5 169 56.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 3.2e-50 203.8 211 52.1
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 1.2e-49 201.8 203 49.3
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.2e-49 201.8 227 48.9
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.6e-49 201.4 230 47.8
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 2.7e-49 200.7 193 56.0
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 3.5e-49 200.3 204 52.0
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 4.6e-49 199.9 190 48.9
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 4.6e-49 199.9 159 56.0
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 6.0e-49 199.5 211 51.7
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 1.0e-48 198.7 231 46.8
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 1.0e-48 198.7 224 48.2
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.3e-48 197.6 218 49.5
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 2.3e-48 197.6 227 46.7
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 5.1e-48 196.4 231 46.8
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 1.5e-47 194.9 231 46.3
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 1.5e-47 194.9 200 49.5
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.3e-47 193.4 206 53.9
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 5.6e-47 193.0 216 45.4
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.8e-45 188.0 217 47.0
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-45 188.0 218 45.4
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-45 188.0 218 45.4
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 2.0e-44 184.5 230 44.8
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 2.0e-44 184.5 230 44.8
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 7.6e-44 182.6 216 48.6
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.0e-43 182.2 108 75.9
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 6.5e-43 179.5 169 52.1
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 1.9e-42 177.9 200 49.5
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 3.2e-42 177.2 224 46.0
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.6e-41 174.9 224 44.2
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 1.6e-41 174.9 174 52.9
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 2.7e-41 174.1 197 45.2
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 4.6e-41 173.3 226 46.0
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 7.9e-41 172.6 215 42.8
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 3.9e-40 170.2 199 46.7
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 8.7e-40 169.1 171 47.4
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 8.7e-40 169.1 171 47.4
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 2.1e-38 164.5 107 68.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.3e-35 155.2 117 59.0
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.8e-35 153.7 107 63.6
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 7.9e-33 146.0 120 60.0
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 3.9e-32 143.7 200 40.5
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.1e-29 133.7 223 39.9
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 1.2e-28 132.1 88 62.5
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 7.7e-28 129.4 107 53.3
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 2.3e-24 117.9 107 51.4
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.8e-08 65.1 44 61.4
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 8.8e-08 62.8 43 60.5
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.8e-08 62.8 43 60.5
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.8e-08 62.8 43 60.5
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 5.7e-07 60.1 183 25.7
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 7.4e-07 59.7 50 46.0


User provided reference genes

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