Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 1.1e-173 613.2 312 100.0
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 1.4e-125 453.4 312 70.5
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 5.5e-125 451.4 305 72.1
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 1.2e-124 450.3 310 71.6
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 5.7e-122 441.4 310 68.7
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 7.4e-122 441.0 314 69.4
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 3.7e-121 438.7 311 69.8
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 8.2e-121 437.6 310 70.0
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.4e-120 436.8 307 71.3
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 1.8e-120 436.4 314 71.3
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 3.1e-120 435.6 314 67.5
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 9.0e-120 434.1 314 67.5
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 9.0e-120 434.1 315 70.8
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.3e-118 430.3 306 69.0
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.3e-118 430.3 306 68.6
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.7e-118 429.9 317 67.8
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 3.8e-118 428.7 306 68.6
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 5.0e-118 428.3 309 68.9
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 5.0e-118 428.3 308 69.2
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 8.5e-118 427.6 306 68.6
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.1e-117 427.2 306 68.6
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 7.2e-117 424.5 309 67.6
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 9.4e-117 424.1 302 70.5
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 2.0e-114 416.4 307 65.5
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 7.4e-114 414.5 268 80.2
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 7.4e-114 414.5 332 63.9
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.8e-113 412.5 305 68.2
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 1.1e-112 410.6 307 66.1
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.4e-112 410.2 312 67.3
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 3.1e-112 409.1 311 67.5
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 5.3e-112 408.3 306 65.0
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 5.3e-112 408.3 307 65.1
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 6.9e-112 407.9 313 66.8
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 6.9e-112 407.9 309 64.1
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 2.0e-111 406.4 310 62.9
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 5.9e-111 404.8 310 62.3
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 5.9e-111 404.8 309 64.7
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 7.7e-111 404.4 308 65.3
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.3e-110 403.7 309 63.1
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.2e-110 402.9 307 65.1
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 2.9e-110 402.5 305 66.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 3.8e-110 402.1 307 64.5
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 8.5e-110 401.0 310 64.2
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 3.2e-109 399.1 307 64.8
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.6e-108 396.7 309 62.8
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 2.7e-108 396.0 323 61.3
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 7.9e-108 394.4 272 77.9
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 1.0e-107 394.0 309 63.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.3e-107 392.9 309 62.8
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 5.2e-107 391.7 311 61.4
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 3.3e-106 389.0 312 63.5
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 9.7e-106 387.5 305 64.3
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.3e-105 387.1 305 63.9
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 1.1e-104 384.0 314 60.8
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 2.4e-104 382.9 312 60.3
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 4.1e-104 382.1 302 62.9
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 9.1e-104 380.9 307 61.2
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 9.1e-104 380.9 309 60.5
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 2.6e-103 379.4 310 61.6
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 2.6e-103 379.4 306 62.1
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.0e-102 377.5 312 60.9
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.7e-102 376.7 296 62.8
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 6.5e-102 374.8 307 63.5
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 6.5e-102 374.8 295 62.4
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 8.5e-102 374.4 307 63.5
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 1.5e-101 373.6 311 61.1
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.5e-101 372.9 307 63.2
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 4.2e-101 372.1 307 63.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 4.2e-101 372.1 308 62.3
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 4.2e-101 372.1 308 62.3
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 4.2e-101 372.1 314 59.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 7.2e-101 371.3 298 63.8
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 1.6e-100 370.2 309 59.9
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.6e-100 370.2 318 59.1
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 4.7e-100 368.6 308 61.4
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.8e-99 366.7 308 60.1
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.8e-99 366.7 307 61.6
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.2e-94 349.7 310 57.7
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 8.5e-94 347.8 309 56.6
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 8.5e-94 347.8 273 65.6
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 5.5e-93 345.1 307 58.6
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 8.0e-92 341.3 231 70.1
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.0e-92 341.3 269 63.2
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 3.0e-91 339.3 313 56.2
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.2e-89 333.2 322 55.9
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 1.1e-88 330.9 259 64.5
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 6.1e-84 315.1 244 67.2
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 2.3e-83 313.2 310 52.6
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 4.4e-82 308.9 221 67.0
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.4e-82 308.9 286 57.7
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 1.4e-80 303.9 267 60.3
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 3.1e-80 302.8 224 64.3
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 3.3e-77 292.7 259 56.8
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 3.6e-76 289.3 241 60.2
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 6.8e-75 285.0 264 57.6
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-69 267.7 211 61.6
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.6e-68 262.7 313 44.1
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 6.6e-62 241.9 310 47.4
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.1e-60 236.9 224 53.6
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 2.1e-60 236.9 304 41.8
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 3.6e-60 236.1 310 43.9
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.1e-59 234.6 154 69.5
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 2.9e-57 226.5 200 59.5
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.1e-56 224.6 323 38.1
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 3.3e-53 213.0 223 50.2
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 2.1e-52 210.3 302 38.7
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 4.7e-52 209.1 196 57.7
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 6.4e-49 198.7 210 50.5
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 3.9e-46 189.5 155 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 3.4e-42 176.4 163 51.5
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 3.2e-40 169.9 169 53.8
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 7.8e-39 165.2 256 42.2
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 2.5e-37 160.2 154 57.8
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 5.6e-37 159.1 316 31.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 2.4e-35 153.7 154 53.2
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 2.6e-34 150.2 105 65.7
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 6.7e-30 135.6 179 46.4
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.1e-29 134.8 166 47.0
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 9.6e-29 131.7 89 68.5
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 6.9e-27 125.6 75 74.7
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 3.8e-25 119.8 160 43.1
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 6.0e-23 112.5 74 68.9
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.8e-22 110.9 74 67.6
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 1.6e-20 104.4 145 40.0
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.1e-19 101.7 118 44.1
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 4.0e-19 99.8 193 37.3
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 3.0e-14 83.6 106 46.2
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 2.8e-12 77.0 106 41.5
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 2.8e-12 77.0 70 47.1
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 9.0e-11 72.0 37 89.2


User provided reference genes

Program Settings