Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-48 195.7 95 100.0
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.6e-25 118.6 94 64.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.8e-23 112.5 98 64.3
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 2.2e-21 105.5 93 60.2
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-20 103.2 88 64.8
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-18 96.3 95 52.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-18 96.3 87 58.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 3.0e-18 95.1 95 52.6
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.0e-18 94.7 86 57.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 6.8e-18 94.0 94 55.3
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.8e-18 94.0 93 50.5
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 8.8e-18 93.6 94 52.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.5e-17 92.8 87 57.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 7.5e-17 90.5 96 51.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.5e-17 90.5 94 52.1
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.5e-17 90.5 86 58.1
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-16 89.7 87 57.5
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.3e-16 89.7 93 48.4
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.2e-16 89.0 96 51.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.2e-16 89.0 87 56.3
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.7e-16 88.2 95 48.4
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 3.7e-16 88.2 86 53.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-15 86.7 92 51.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.4e-15 86.3 87 54.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-15 86.3 90 53.3
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.8e-15 85.9 92 53.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.8e-15 85.9 88 53.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.8e-15 85.9 89 52.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.8e-15 85.9 91 51.6
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.4e-15 85.5 97 52.6
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.4e-15 85.5 90 47.8
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-15 85.5 94 48.9
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.1e-15 85.1 87 52.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-15 85.1 97 47.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.1e-15 85.1 98 51.0
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.1e-15 85.1 93 52.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.1e-15 85.1 93 50.5
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.4e-15 84.3 94 47.9
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.0e-15 84.0 96 46.9
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 7.0e-15 84.0 95 48.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.0e-15 84.0 97 51.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.1e-15 83.6 88 50.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-14 83.2 97 46.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.6e-14 82.8 95 49.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.6e-14 82.8 95 48.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-14 82.8 93 51.6
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.6e-14 82.8 92 45.7
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-14 82.4 95 44.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.0e-14 82.4 92 45.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 2.0e-14 82.4 92 51.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-14 82.4 96 47.9
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-14 82.4 96 47.9
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.7e-14 82.0 93 50.5
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.5e-14 81.6 80 57.5
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.7e-14 80.5 88 48.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 7.7e-14 80.5 91 48.4
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.7e-14 80.5 93 50.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 7.7e-14 80.5 91 47.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.0e-13 80.1 96 49.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.0e-13 80.1 92 44.6
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.3e-13 79.7 88 47.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-13 79.7 92 43.5
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.3e-13 79.7 97 45.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.7e-13 79.3 92 46.7
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.7e-13 79.3 90 50.0
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.3e-13 79.0 93 50.5
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.3e-13 79.0 94 47.9
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.9e-13 78.6 95 50.5
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.9e-13 78.6 96 45.8
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.9e-13 78.6 92 44.6
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.9e-13 78.6 93 44.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.8e-13 78.2 90 47.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 3.8e-13 78.2 92 44.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.0e-13 77.8 88 50.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.0e-13 77.8 68 57.4
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 6.5e-13 77.4 100 43.0
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.5e-13 77.4 80 53.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.5e-13 77.4 90 45.6
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.5e-13 77.4 85 50.6
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.1e-12 76.6 96 45.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.1e-12 76.6 88 47.7
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.1e-12 76.6 86 51.2
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.1e-12 76.6 91 46.2
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.5e-12 76.3 98 46.9
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-12 76.3 87 52.9
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.5e-12 76.3 84 46.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.5e-12 76.3 95 43.2
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.5e-12 76.3 97 48.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.9e-12 75.9 87 41.4
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 46.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 46.3
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.9e-12 75.9 97 44.3
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 49.5
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.5e-12 75.5 96 45.8
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 3.2e-12 75.1 83 48.2
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 4.2e-12 74.7 95 43.2
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 7.2e-12 73.9 95 46.3
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.5e-12 73.6 90 51.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 9.5e-12 73.6 62 59.7
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 9.5e-12 73.6 97 43.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 9.5e-12 73.6 93 40.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.5e-12 73.6 96 49.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-11 73.2 95 45.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-11 73.2 95 45.3
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 84 52.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 91 48.4
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.6e-11 72.8 99 47.5
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 1.6e-11 72.8 85 47.1
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-11 72.8 79 48.1
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-11 72.4 92 44.6
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-11 72.4 92 44.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-11 72.4 95 41.1
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.1e-11 72.4 94 42.6
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-11 72.0 95 42.1
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.8e-11 72.0 86 44.2
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.6e-11 71.6 91 45.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 3.6e-11 71.6 92 52.2
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 3.6e-11 71.6 92 44.6
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.7e-11 71.2 79 50.6
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.7e-11 71.2 62 56.5
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 8.0e-11 70.5 91 49.5
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 8.0e-11 70.5 86 47.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 8.0e-11 70.5 84 48.8
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.0e-10 70.1 41 78.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.0e-10 70.1 47 70.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.0e-10 70.1 97 46.4
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-10 69.3 91 49.5
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.8e-10 69.3 90 44.4
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.3e-10 68.9 95 45.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.3e-10 68.9 92 44.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.3e-10 68.9 90 44.4
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 3.0e-10 68.6 43 67.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 3.0e-10 68.6 74 52.7
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.0e-10 68.6 51 68.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 3.0e-10 68.6 90 47.8
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 5.2e-10 67.8 93 45.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 6.8e-10 67.4 90 45.6
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.8e-10 67.0 93 46.2
AUR62033576 Chenopodium quinoa HOM05D040036 ORTHO05D004215 1.2e-09 66.6 88 45.5
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 93 47.3
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 93 47.3
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 91 46.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.5e-09 66.2 64 56.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.6e-09 65.5 101 40.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 80 50.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.4e-09 65.1 36 80.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.4e-09 65.1 56 55.4
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.4e-09 65.1 97 42.3
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.4e-09 64.7 94 44.7
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.4e-09 64.7 94 44.7
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 7.5e-09 63.9 92 44.6
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 7.5e-09 63.9 97 40.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 87 42.5
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.3e-08 63.2 90 46.7
EL10Ac7g16989 Beta vulgaris HOM05D040036 ORTHO05D004215 1.7e-08 62.8 93 46.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-08 62.8 81 45.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.8e-08 62.0 80 43.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.8e-08 62.0 80 43.8
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.8e-08 62.0 86 41.9
Actinidia39884 Actinidia chinensis HOM05D000123 ORTHO05D000064 3.7e-08 61.6 72 48.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.9e-08 61.2 89 43.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.9e-08 61.2 86 40.7
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 85 41.2
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 6.3e-08 60.8 91 42.9
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.3e-08 60.8 81 40.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 6.3e-08 60.8 83 41.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 6.3e-08 60.8 83 41.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.3e-08 60.8 45 62.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 6.3e-08 60.8 38 65.8
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 8.3e-08 60.5 79 40.5
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.3e-08 60.5 88 42.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.1e-07 60.1 88 42.0
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.8e-07 59.3 75 45.3
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 2.4e-07 58.9 95 40.0
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 46 67.4
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 3.1e-07 58.5 75 42.7
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.4e-07 57.8 37 64.9
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.4e-07 57.8 84 41.7
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.2e-07 57.0 88 40.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-06 56.6 67 52.2
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 98 39.8
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.7e-06 55.5 92 43.5
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 7.8e-06 53.9 84 39.3
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 7.8e-06 53.9 81 42.0


User provided reference genes

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